View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18258_high_7 (Length: 347)
Name: NF18258_high_7
Description: NF18258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18258_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 6893727 - 6893392
Alignment:
| Q |
1 |
ccctcatgctaattatcaaggtggttcattctttagtacctttaagagcagcagtaaaagaataggttgaagggtcaatttcatctgcaaaataaatcat |
100 |
Q |
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| T |
6893727 |
ccctcatgctaattatcaaggtggttcattctttagtacctttaagagcagtagtaaaagaataggttgaagggtcaatttcatctgcaaaacaaatcat |
6893628 |
T |
|
| Q |
101 |
aaaattttaagaaaaacttgatgtaactttagtcacnnnnnnnnnnnnnnnnntaaatacattatgaacttcttgaagtgaaataaaaatgaaattaatg |
200 |
Q |
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| T |
6893627 |
aaaattttaagaaaaacttgatgtaactttagtcacaaaaaaataaaaaaaa-taaaaacattatgaacttcttgaagtgaaataaaaatgaaattaatg |
6893529 |
T |
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| Q |
201 |
taccttttaatgtatatccaggagaagaagcagtgctagaaatggttatatttgatctaaaagactttgaatcttctctaatacttctaataattgatgc |
300 |
Q |
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| T |
6893528 |
taccttttaatgtatatccaggagaagaagcagtgctagaaatggttatatttgatctaaaagactttgaatcttctctaatacttctaataattgatgc |
6893429 |
T |
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| Q |
301 |
tgaatatcttcttgattttgtattctctctacctatg |
337 |
Q |
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| T |
6893428 |
tgaatatcttcttgattttgtattctctctacttatg |
6893392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 281
Target Start/End: Original strand, 5939950 - 5940035
Alignment:
| Q |
196 |
taatgtaccttttaatgtatatccaggagaagaagcagtgctagaaatggttatatttgatctaaaagactttgaatcttctctaa |
281 |
Q |
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| T |
5939950 |
taatgtacctttaaaagggtatccaggagaagaagcagtactagaaatggttatatttgatctttgagaccttgtatcttctctaa |
5940035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 5939823 - 5939878
Alignment:
| Q |
37 |
tacctttaagagcagcagtaaaagaataggttgaagggtcaatttcatctgcaaaa |
92 |
Q |
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|||||||||| |||| || |||||||| ||||||||||||||||||||||||||| |
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| T |
5939823 |
tacctttaagggcagtggtgaaagaatatgttgaagggtcaatttcatctgcaaaa |
5939878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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