View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18258_high_8 (Length: 344)

Name: NF18258_high_8
Description: NF18258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18258_high_8
NF18258_high_8
[»] chr2 (2 HSPs)
chr2 (13-326)||(8380404-8380714)
chr2 (206-243)||(26212328-26212365)
[»] chr7 (2 HSPs)
chr7 (14-132)||(15332227-15332345)
chr7 (16-141)||(3106417-3106544)
[»] chr4 (3 HSPs)
chr4 (15-132)||(46118130-46118247)
chr4 (15-132)||(46131264-46131381)
chr4 (20-99)||(36671926-36672005)
[»] chr1 (2 HSPs)
chr1 (16-140)||(32498246-32498370)
chr1 (33-87)||(43355377-43355431)
[»] chr5 (3 HSPs)
chr5 (13-137)||(35669066-35669190)
chr5 (17-108)||(40867407-40867498)
chr5 (193-233)||(39000256-39000296)
[»] chr8 (1 HSPs)
chr8 (15-108)||(5078914-5079007)
[»] scaffold1790 (1 HSPs)
scaffold1790 (13-80)||(4-71)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 326
Target Start/End: Complemental strand, 8380714 - 8380404
Alignment:
Q  13 cagaaaaaagtatttaatttttatttataattctgttctcaaatcaggaccatccgatcatgatcggatggccgagaatgcatgactacgtgaatgtggc 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |  ||| ||||||||||| ||||||||||||    
T  8380714 cagaaaaaattatttaatttttatttataattctgttctcaaatcaggaccatccgatcataatcggacgatcgaaaatgcatgactgcgtgaatgtggc 8380615  T
Q  113 aagttgccgactgcagtcaaccacggtccttaaaaatgtctctttaatcagttaatttgttcctcgaatatagtttttgcaagttaatttgataaataaa 212  Q
    |||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8380614 aagttgccaactgcagtcaatcacagtccttaaaaatgtctctttaatcagttaatttgttcctcgaatatagtttttgcaagttaatttgataaataaa 8380515  T
Q  213 attactaacaaaagagatatttgagaatgtga-tttcattaaattcatatgcatcacacatttatgaccaaaataattatttaccattcatttaaaacta 311  Q
    ||||||    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8380514 attact----aaagagatatttgagaatgtgattttctttaaattcatatgcatcacacatttatgaccaaaataattttttaccattcatttaaaacta 8380419  T
Q  312 ttcaagtgacatatc 326  Q
    | |||||||||||||    
T  8380418 tgcaagtgacatatc 8380404  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 26212365 - 26212328
Alignment:
Q  206 aaataaaattactaacaaaagagatatttgagaatgtg 243  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  26212365 aaataaaattactaacaaaaaagatacttgagaatgtg 26212328  T

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Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 15332227 - 15332345
Alignment:
Q  14 agaaaaaagtatttaatttttatttataattctgttctcaaatcaggaccatccgatcatgatcggatggccgagaatgcatgactacgtgaatgtggca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||   |||||| ||||    
T  15332227 agaaaaaagtatttaatttttatttataattctgttctcaaatcaggatcatccgattatgatcggatggtcgagaatgcatgactttatgaatgcggca 15332326  T
Q  114 agttgccgactgcagtcaa 132  Q
    | || ||||||||||||||    
T  15332327 aattaccgactgcagtcaa 15332345  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 3106417 - 3106544
Alignment:
Q  16 aaaaaagtatttaatttttatttataattctgttctcaaatcaggaccatccgatcatgatcggatggc--cgagaatgcatgactacgtgaatgtggca 113  Q
    |||||||||||||| ||||||||||||||||||||||||||||||  |||| |||||||||| || | |  ||||||||||||||| ||||||||||| |    
T  3106417 aaaaaagtatttaaattttatttataattctgttctcaaatcagggtcatctgatcatgatcagacgacctcgagaatgcatgactgcgtgaatgtggta 3106516  T
Q  114 agttgccgactgcagtcaaccacggtcc 141  Q
    |  |||||| ||||||||| ||||||||    
T  3106517 aaatgccgattgcagtcaatcacggtcc 3106544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 46118130 - 46118247
Alignment:
Q  15 gaaaaaagtatttaatttttatttataattctgttctcaaatcaggaccatccgatcatgatcggatggccgagaatgcatgactacgtgaatgtggcaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||||||||||||||||  ||||||| || ||    
T  46118130 gaaaaaagtatttaatttttatttataattctgttctcaaattaggaccatccggtcatgattggacggccgagaatgcatgactgtgtgaatgcggtaa 46118229  T
Q  115 gttgccgactgcagtcaa 132  Q
     |||| ||||||||||||    
T  46118230 attgctgactgcagtcaa 46118247  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 46131264 - 46131381
Alignment:
Q  15 gaaaaaagtatttaatttttatttataattctgttctcaaatcaggaccatccgatcatgatcggatggccgagaatgcatgactacgtgaatgtggcaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||||||||||||||||  ||||||| || ||    
T  46131264 gaaaaaagtatttaatttttatttataattctgttctcaaattaggaccatccggtcatgattggacggccgagaatgcatgactgtgtgaatgcggtaa 46131363  T
Q  115 gttgccgactgcagtcaa 132  Q
     |||| ||||||||||||    
T  46131364 attgctgactgcagtcaa 46131381  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 36671926 - 36672005
Alignment:
Q  20 aagtatttaatttttatttataattctgttctcaaatcaggaccatccgatcatgatcggatggccgagaatgcatgact 99  Q
    ||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| || ||||||| ||||||||||||||    
T  36671926 aagtatttaatctttatttataattctattcttaaatcaggaccatccgatcatcattggatggctgagaatgcatgact 36672005  T

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Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 32498246 - 32498370
Alignment:
Q  16 aaaaaagtatttaatttttatttataattctgttctcaaatcaggaccatccgatcatgatcggatggccgagaatgcatgactacgtgaatgtggcaag 115  Q
    |||||||||||||||||||||||| ||||||||||| |||||| |||||| |||||||||||||| || |||||||| |||||||| | |||| |||||     
T  32498246 aaaaaagtatttaatttttatttacaattctgttcttaaatcatgaccattcgatcatgatcggacggtcgagaatgtatgactacataaatgcggcaaa 32498345  T
Q  116 ttgccgactgcagtcaaccacggtc 140  Q
    ||||||||||||||||| |||||||    
T  32498346 ttgccgactgcagtcaatcacggtc 32498370  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 43355377 - 43355431
Alignment:
Q  33 ttatttataattctgttctcaaatcaggaccatccgatcatgatcggatggccga 87  Q
    |||||||||||||||||||||||||| || ||||| |||||||||||| ||||||    
T  43355377 ttatttataattctgttctcaaatcaagatcatcctatcatgatcggacggccga 43355431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 35669066 - 35669190
Alignment:
Q  13 cagaaaaaagtatttaatttttatttataattctgttctcaaatcaggaccatccgatcatgatcggatggccgagaatgcatgactacgtgaatgtggc 112  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||  | |||||| || | |||||||||||||||| | | |||| |||    
T  35669066 cagaaaaaagtatttaaattttatttataattctgttctcaaatcaggaccatccctttatgatcagacgaccgagaatgcatgactgcataaatgcggc 35669165  T
Q  113 aagttgccgactgcagtcaaccacg 137  Q
    || |||| |||||||||||| ||||    
T  35669166 aaattgctgactgcagtcaatcacg 35669190  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 40867498 - 40867407
Alignment:
Q  17 aaaaagtatttaatttttatttataattctgttctcaaatcaggaccatccgatcatgatcggatggccgagaatgcatgactacgtgaatg 108  Q
    |||||||||| |||||||||| ||||||||||||| |||| |||||||| |||||||||||||| |||||||||||||||| | ||||||||    
T  40867498 aaaaagtattcaatttttattcataattctgttcttaaattaggaccattcgatcatgatcggacggccgagaatgcatgattgcgtgaatg 40867407  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 39000296 - 39000256
Alignment:
Q  193 aagttaatttgataaataaaattactaacaaaagagatatt 233  Q
    |||||| |||||| ||||||||||||||||||||| |||||    
T  39000296 aagttagtttgatgaataaaattactaacaaaagatatatt 39000256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 5078914 - 5079007
Alignment:
Q  15 gaaaaaagtatttaatttttatttataattctgttctcaaatcaggaccatccgatcatgatcggatggccgagaatgcatgactacgtgaatg 108  Q
    ||||||| || ||||||||||||||||| |||||||||||||||||||||| |||||||||||||| | |||||||||||||||| ||||||||    
T  5078914 gaaaaaattacttaatttttatttataaatctgttctcaaatcaggaccattcgatcatgatcggacgaccgagaatgcatgactgcgtgaatg 5079007  T

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Target: scaffold1790 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold1790
Description:

Target: scaffold1790; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 71 - 4
Alignment:
Q  13 cagaaaaaagtatttaatttttatttataattctgttctcaaatcaggaccatccgatcatgatcgga 80  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||| || |||||||||    
T  71 cagaaaaaaatatttaatttttatttataattatgttctcaaatcaggaccatccaataatgatcgga 4  T

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