View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18258_low_12 (Length: 318)
Name: NF18258_low_12
Description: NF18258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18258_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 318
Target Start/End: Complemental strand, 35883064 - 35882762
Alignment:
| Q |
20 |
tactactaattgagaaggatgcaaccactacaacaatcttcacccaatatatttgtccctataggctgtagaggctaacctataagaacaacaatattgt |
119 |
Q |
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| T |
35883064 |
tactactaattgagaaggattcaaccactacaacaatcttcacccaatatatttgtccctataggctatagaggcta-cctataagaacaacaatattgt |
35882966 |
T |
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| Q |
120 |
taaatcatgtgacatagtaaatgtaata----tttatgtaactcatgaattttccatctctacctctctgacaaggttgctagataaatttgtgtgacac |
215 |
Q |
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| T |
35882965 |
taaatcatgtgacatagtaaatgtaataagtatttatgtaactcatgaattttccatctctacctctctgacaaggttgctagataaatttgtgtgacgc |
35882866 |
T |
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| Q |
216 |
acttcttaatgtgannnnnnnnngcaacaaaagg--nnnnnnngaatgcaacattaatatgaaaaaagtgacattttaggtagagtgtgcattaaccttc |
313 |
Q |
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||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35882865 |
actgcttaatgtga-ttttttttgcaacaaaaggaaaaaaagagaatgcaacattaatatgaaaaaagtgacattttaggtagagtgtgcattaaccttc |
35882767 |
T |
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| Q |
314 |
atttc |
318 |
Q |
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| T |
35882766 |
atttc |
35882762 |
T |
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