View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18258_low_16 (Length: 243)
Name: NF18258_low_16
Description: NF18258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18258_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 16912828 - 16912688
Alignment:
| Q |
96 |
ggaatccaataaaatcctctacgactccaaacaaacgagagaggatttaaccatcaatgatttaaatcaaatccaaaatattttgcaatgatttgaatca |
195 |
Q |
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| T |
16912828 |
ggaatccaataaaatcctctacaactccaaacaaacgagagaggatttaaccatcaatgatttaaatcaaatccaaaatattttgcaatgatttgaatca |
16912729 |
T |
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| Q |
196 |
tatacatgttcatcactcatggctcatcatcaacctccatgtcc |
239 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16912728 |
tatacatgttcatcactcatggctc---atcaacctccatgtcc |
16912688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 16918002 - 16917862
Alignment:
| Q |
96 |
ggaatccaataaaatcctctacgactccaaacaaacgagagaggatttaaccatcaatgatttaaatcaaatccaaaatattttgcaatgatttgaatca |
195 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16918002 |
ggaatccaataaaatcctctacaactccaaacaaacgagataggatttaaccatcaatgatttaaatcaaatccaaaatattttgcaatgatttgaatca |
16917903 |
T |
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| Q |
196 |
tatacatgttcatcactcatggctcatcatcaacctccatgtcc |
239 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16917902 |
tatacatgttcatcactcatggctc---atcaacctccatgtcc |
16917862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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