View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18258_low_17 (Length: 241)
Name: NF18258_low_17
Description: NF18258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18258_low_17 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 3225879 - 3226103
Alignment:
| Q |
16 |
aaaagatacgtgtttgataacacagtgagtttgccagaagcacggagaaccattgtgatatcaaacatgcacgaatagtgatacatacatgtgaacagcg |
115 |
Q |
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| T |
3225879 |
aaaagatacgtgtttgataacaca-tgagtttgccagaagcacggagaaccattgtgatatcaaacatgcacgaatagtgatacatacatgtgaacggcg |
3225977 |
T |
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| Q |
116 |
acattaaggtcatgagcaactccttcaggaattggaacatatgtttcaacagcaactttatgggcttcttcagctcgagctttgacaaaatcatcaattt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3225978 |
acattaaggtcatgagcaactccttcaggaattggaacatatgtttcaacagcaactttatgggcttcttcagctcgagctttgacaaaatcatcaattt |
3226077 |
T |
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| Q |
216 |
cagcaggagataaaacatgtgcagcc |
241 |
Q |
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|||||||||||||||||||||||||| |
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| T |
3226078 |
cagcaggagataaaacatgtgcagcc |
3226103 |
T |
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