View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18258_low_2 (Length: 498)
Name: NF18258_low_2
Description: NF18258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18258_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 11 - 480
Target Start/End: Complemental strand, 43521996 - 43521528
Alignment:
| Q |
11 |
cacagacgacattatataattatataaataataaataatgtaaaagcaaacagatatacttttccatcctaaaatgatcagcaaaatataagaaaaaaga |
110 |
Q |
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| T |
43521996 |
cacagacgacattatataattatataaataa---ataatgtaaaagcaaagagatatacttttccatcctaaaatgatcagcaaaatataagaaaacaga |
43521900 |
T |
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| Q |
111 |
gctgacaaagtgaagcagatggataatttgcatataagggacgcattcttcccataagcaatcagaaacactgcttacagggcagacgaatagtccccaa |
210 |
Q |
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| T |
43521899 |
gctgacaaagtgaagcagatggataatttgcatataagggacgcattcttcccataagcaatcagaaacactgcttacagggcagacgaatagtccccaa |
43521800 |
T |
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| Q |
211 |
aaaattgcaaataaatacagatctacttcaacaatacaaagttatcactgtttgattggttgatatgaaagtcatcagataggagcgaaagact-aagat |
309 |
Q |
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| T |
43521799 |
aaaattgcaaataaatacagatctacttcaacaatacaaatttatcactgtttgattggttgatatgaaagtcatcagataggagcgaaagactaaagat |
43521700 |
T |
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| Q |
310 |
tttgtttaatcataaatagatcatttgaactatgcaattgatcatcatatgactctccaatcaatcaaagatgttgaacttaataatactattacaacaa |
409 |
Q |
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| T |
43521699 |
tctgtttaatcataaatagatcatttgaactatgcaattgatcatcatatgactctccaaccaatcaaagatgttgaacttaataatactattacaacaa |
43521600 |
T |
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| Q |
410 |
aataaaatgaaaatataaaattcctcagaaggaaggcagtatggtatagt-aatcatcaatgttcataccct |
480 |
Q |
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| T |
43521599 |
aataaaatgaaaatataaaattcctcagaaggaaggcagtatggtatagtaaatcatcaatgttcataccct |
43521528 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 370
Target Start/End: Original strand, 53017541 - 53017630
Alignment:
| Q |
280 |
agtcatcagataggagcgaaagactaagattttgtttaatcataaatagatcatttgaactatgcaattgatcatcatatgactctccaat |
370 |
Q |
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| T |
53017541 |
agtcatcagataggagcgaaagactaaaattt-gaataatcacgaattcatcatttgaactatgctattaatcatcatttgactctccaat |
53017630 |
T |
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