View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18258_low_20 (Length: 233)
Name: NF18258_low_20
Description: NF18258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18258_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 5952645 - 5952438
Alignment:
| Q |
9 |
gagtgagatgaatgctaaattgggtcaacaaatgtgtaacgcttttgaggtaattaaattggaatgaaaagtgtgtaccnnnnnnnnn-tattggaataa |
107 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| |
|
|
| T |
5952645 |
gagtgaaatcaatgctaaattgggtcaacaaatgtgtaacgcttttgaggtaattaaattggaataaaaagtgtgcaccaaaaaaaaaatattggaataa |
5952546 |
T |
|
| Q |
108 |
aaagtgtgtgagagatacaagtattgtcgggacaaagagggaaagaaagactatggtcttggtcaattaaaatgaatggaataatatgcattcatgattc |
207 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5952545 |
aaagtgtg--agagatacaagtattgtcgggacaaagagggaaagaaagactatggtcttggtcaattaaaatgaatgaaataatatgcattcatgattc |
5952448 |
T |
|
| Q |
208 |
tattaaattc |
217 |
Q |
| |
|
|||||||||| |
|
|
| T |
5952447 |
tattaaattc |
5952438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 27076953 - 27076834
Alignment:
| Q |
98 |
attggaataaaaagtgtgtgagagatacaagtattgtcgggacaaagagggaaagaaagactatggtcttggtcaattaaaatgaatggaataatatgca |
197 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
27076953 |
attggaataacaagtgtgtgagagatacaagtattgtcgtgacaaagagggaaagaaagactatggtcttggtcaattgaaatgaatggaataatatgta |
27076854 |
T |
|
| Q |
198 |
ttcatgattctattaaattc |
217 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27076853 |
ttcatgattctattaaattc |
27076834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 3510381 - 3510262
Alignment:
| Q |
98 |
attggaataaaaagtgtgtgagagatacaagtattgtcgggacaaagagggaaagaaagactatggtcttggtcaattaaaatgaatggaataatatgca |
197 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||| | || |||||||||||||||||||| ||||||||| || ||||||||||||||||||||| |
|
|
| T |
3510381 |
attggaataacaagtgtgtgagtgatacaagtattgtcgtggcagagagggaaagaaagactatgatcttggtcagttgaaatgaatggaataatatgca |
3510282 |
T |
|
| Q |
198 |
ttcatgattctattaaattc |
217 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3510281 |
ttcatgattctattaaattc |
3510262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 3510438 - 3510363
Alignment:
| Q |
9 |
gagtgagatgaatgctaaattgggtcaacaaatgtgtaacgcttttgaggtaattaaattggaatgaaaagtgtgt |
84 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
3510438 |
gagtgaaatcaatgctaaattgggtcaacaaatgtataacgcttttgaggtaattaaattggaataacaagtgtgt |
3510363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 27077001 - 27076935
Alignment:
| Q |
21 |
tgctaaattgggtcaacaaatgtgtaacgcttttgaggtaat---taaattggaatgaaaagtgtgt |
84 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||| | |||||||| |
|
|
| T |
27077001 |
tgctaaattgggtcaacaaatgcgtaacgcttttgaggtaattagtaaattggaataacaagtgtgt |
27076935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University