View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18258_low_21 (Length: 226)
Name: NF18258_low_21
Description: NF18258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18258_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 22879035 - 22878882
Alignment:
| Q |
1 |
cttcatgtcacacttcaaaatcttggtacattttttctaaggtagaatttgtaaaattacannnnnnnnn-catctcgcacaggacctcaacaacaagat |
99 |
Q |
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| T |
22879035 |
cttcatgtcacacttcaaaatcttg-tacattttttc-aaggtagaatttgtaaaattacattttttttttcatctcgcgcaggacctcaacaacaagat |
22878938 |
T |
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| Q |
100 |
tttcttaaatgcagtgaaaggtgagagaattgttttccatgtctattgttattgtg |
155 |
Q |
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| T |
22878937 |
tttcttaaatgcagtgaaaggtgagagaatttttttccatgtctattgttattgtg |
22878882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 22878848 - 22878805
Alignment:
| Q |
179 |
ttgtagttgatcattgcttgagaaacttatcaatgtatcatttg |
222 |
Q |
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| T |
22878848 |
ttgtacttgatcattggttgaaaaacttatcaatgtatcatttg |
22878805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 47991434 - 47991386
Alignment:
| Q |
80 |
caggacctcaacaacaagattttcttaaatgcagtgaaaggtgagagaa |
128 |
Q |
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| T |
47991434 |
caggacctcaacaacaaaattttgttaaatgcaataaaaggtaagagaa |
47991386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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