View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18258_low_22 (Length: 225)

Name: NF18258_low_22
Description: NF18258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18258_low_22
NF18258_low_22
[»] chr8 (1 HSPs)
chr8 (117-211)||(31972834-31972928)
[»] chr6 (4 HSPs)
chr6 (117-211)||(28321744-28321838)
chr6 (117-211)||(22824238-22824332)
chr6 (117-179)||(16272646-16272708)
chr6 (176-211)||(16273002-16273037)
[»] chr1 (1 HSPs)
chr1 (117-211)||(29995604-29995698)
[»] scaffold0061 (1 HSPs)
scaffold0061 (117-211)||(41318-41412)
[»] scaffold0038 (1 HSPs)
scaffold0038 (117-211)||(113069-113163)
[»] scaffold0017 (1 HSPs)
scaffold0017 (117-211)||(157373-157467)
[»] chr3 (3 HSPs)
chr3 (117-211)||(42394011-42394105)
chr3 (117-211)||(10024790-10024884)
chr3 (118-211)||(32967663-32967756)
[»] chr2 (2 HSPs)
chr2 (117-211)||(19047571-19047665)
chr2 (117-211)||(39832664-39832758)


Alignment Details
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 31972834 - 31972928
Alignment:
Q  117 gttcaaataaggcttataaagtcctcaagaacatgtatattagaatatttcttttaattagtatttaatttaatatcaacaagagcgaccctatg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31972834 gttcaaataaggcttataaagtcctcaagaacatgtatattagaaaatttcttttaattagtatttaatttaatatcaacaagagcgaccctatg 31972928  T

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Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 28321838 - 28321744
Alignment:
Q  117 gttcaaataaggcttataaagtcctcaagaacatgtatattagaatatttcttttaattagtatttaatttaatatcaacaagagcgaccctatg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28321838 gttcaaataaggcttataaagtcctcaagaacatgtatattagaaaatttcttttaattagtatttaatttaatatcaacaagagcaaccctatg 28321744  T

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Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 22824238 - 22824332
Alignment:
Q  117 gttcaaataaggcttataaagtcctcaagaacatgtatattagaatatttcttttaattagtatttaatttaatatcaacaagagcgaccctatg 211  Q
    |||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  22824238 gttcaaataaggcttagaaagtcctcaagaacatgtatattagaaaacttcttttaattagtatttaatttaatatcaacaagagcgaccctatg 22824332  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 16272646 - 16272708
Alignment:
Q  117 gttcaaataaggcttataaagtcctcaagaacatgtatattagaatatttcttttaattagta 179  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  16272646 gttcaaataaggcttataaagtcctcaaaaacatgtatattagaaaatttcttttaattagta 16272708  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 16273002 - 16273037
Alignment:
Q  176 agtatttaatttaatatcaacaagagcgaccctatg 211  Q
    ||||||||||||||||||||||||||| ||||||||    
T  16273002 agtatttaatttaatatcaacaagagcaaccctatg 16273037  T

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Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 29995604 - 29995698
Alignment:
Q  117 gttcaaataaggcttataaagtcctcaagaacatgtatattagaatatttcttttaattagtatttaatttaatatcaacaagagcgaccctatg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29995604 gttcaaataaggcttataaagtcctcaagaacatgtatattagaaaatttcttttaattagtatttaatttaatatcaacaagagcaaccctatg 29995698  T

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Target: scaffold0061 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 41412 - 41318
Alignment:
Q  117 gttcaaataaggcttataaagtcctcaagaacatgtatattagaatatttcttttaattagtatttaatttaatatcaacaagagcgaccctatg 211  Q
    ||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41412 gttcaaataaggcttataaagtcctcaagaacatgtacattacaaaatttcttttaattagtatttaatttaatatcaacaagagcgaccctatg 41318  T

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Target: scaffold0038 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 113163 - 113069
Alignment:
Q  117 gttcaaataaggcttataaagtcctcaagaacatgtatattagaatatttcttttaattagtatttaatttaatatcaacaagagcgaccctatg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  113163 gttcaaataaggcttataaagtcctcaagaacatgtatattagaaaatttcctttaattagtatttaatttaatatcaacaagagcaaccctatg 113069  T

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Target: scaffold0017 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 157373 - 157467
Alignment:
Q  117 gttcaaataaggcttataaagtcctcaagaacatgtatattagaatatttcttttaattagtatttaatttaatatcaacaagagcgaccctatg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  157373 gttcaaataaggcttataaagtcctcaagaacatgtatattagaaaatttcctttaattagtatttaatttaatatcaacaagagcaaccctatg 157467  T

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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 42394011 - 42394105
Alignment:
Q  117 gttcaaataaggcttataaagtcctcaagaacatgtatattagaatatttcttttaattagtatttaatttaatatcaacaagagcgaccctatg 211  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42394011 gttcaaataaggcttataaagtcttcaagaacatgtatattagaaaatttcttttaattagtatttaatttaatatcaacaagagcaaccctatg 42394105  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 10024884 - 10024790
Alignment:
Q  117 gttcaaataaggcttataaagtcctcaagaacatgtatattagaatatttcttttaattagtatttaatttaatatcaacaagagcgaccctatg 211  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10024884 gttcaaacaaggcttataaagtcctcaagaacatgtacattagaaaatttcttttaattagtatttaatttaatatcaacaagagcaaccctatg 10024790  T

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Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 32967663 - 32967756
Alignment:
Q  118 ttcaaataaggcttataaagtcctcaagaacatgtatattagaatatttcttttaattagtatttaatttaatatcaacaagagcgaccctatg 211  Q
    |||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32967663 ttcaaataaggcttataaagtcttcaagaacatgtatatttgaaaatttcttttaattagtatttaatttaatatccacaagagcgaccctatg 32967756  T

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Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 19047665 - 19047571
Alignment:
Q  117 gttcaaataaggcttataaagtcctcaagaacatgtatattagaatatttcttttaattagtatttaatttaatatcaacaagagcgaccctatg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  19047665 gttcaaataaggcttataaagtcctcaagaacatgtatattagaaaatttcctttaattagtatttaatttaatatcaacaagagcaaccctatg 19047571  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 39832664 - 39832758
Alignment:
Q  117 gttcaaataaggcttataaagtcctcaagaacatgtatattagaatatttcttttaattagtatttaatttaatatcaacaagagcgaccctatg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  39832664 gttcaaataaggcttataaagtcctcaagaacatgtatattagaaaatttcctttaattagtatttaatttaatatcaacaagagcaaccctatg 39832758  T

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