View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18258_low_3 (Length: 495)
Name: NF18258_low_3
Description: NF18258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18258_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 20 - 485
Target Start/End: Complemental strand, 42687131 - 42686660
Alignment:
| Q |
20 |
tgtctgacttatttacttaga------caggttgcttccattactccagcttttctgtactgtgacggcaaattcacctgtcatattgctgcaaattcaa |
113 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42687131 |
tgtctgacttatttacttagagatcttcaggttgcttccattactccagcttttctgtactgtgacggcaaattcacctgtcatattgctgcaaattcaa |
42687032 |
T |
|
| Q |
114 |
cctttcacgagcctattgagcatattgaaatcggttgtcacattgttcgtgagaaactccaaacaaaactctttcgactaatgcacatctcaagcaaaga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42687031 |
cctttcacgagcctattgagcatattgaaatcggttgtcacaatgttcgcgagaaactccaaacaaaactctttcgactaatgcacatctcaagcaaaga |
42686932 |
T |
|
| Q |
214 |
tcaattagcggctacttttacaaaacctcttgatcctcaacattttcattctctcctttccaaattccaaaccaggaattattgacatacactctccacc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42686931 |
tcaattagcggctacttttacaaaacctcttgatcctcaacattttcattctctcctttccaaattccaaaccaggaattattgacatacactctccacc |
42686832 |
T |
|
| Q |
314 |
ttgtgagggtattagataaataagtttgttgtatactttaccttgggttagttagtttgattggttagcttagttaattgtttagcctaaccctatgatt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42686831 |
ttgtgagggtattagataaataagtttgttgtatactttaccttgggttagttagtttgattggttagcttagttaattgtttagcctaaccctatgatt |
42686732 |
T |
|
| Q |
414 |
tatttcttgatcttgggttagttagtttacttagtctgttaggttagtcagtgctttagcctataccctatg |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42686731 |
tatttcttgatcttgggttagttagtttacttagtctgttaggttagtcagtgctttagcctataccctatg |
42686660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 321 - 436
Target Start/End: Complemental strand, 42688074 - 42687955
Alignment:
| Q |
321 |
ggtattagataaataagtttgttgtatactttaccttgggttagt----tagtttgattggttagcttagttaattgtttagcctaaccctatgatttat |
416 |
Q |
| |
|
|||||||||||||||| | || ||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||| |||| |||| ||| |
|
|
| T |
42688074 |
ggtattagataaataattctgccctatactttaccttgggttagtaagttagtttgcttggttagcttagttagttgtttagcctagccctctgatgtat |
42687975 |
T |
|
| Q |
417 |
ttcttgatcttgggttagtt |
436 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
42687974 |
tttttgatcttgggttagtt |
42687955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University