View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18258_low_5 (Length: 422)
Name: NF18258_low_5
Description: NF18258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18258_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 22879488 - 22879062
Alignment:
| Q |
1 |
aatcacataattcagtgtaattattgggacacgcctaatccaatccgaggagtgtctgtgtttcatagtttataattctttctatgttctattcttttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22879488 |
aatcacataattcagtgtaattattgggacacgcctaatccaatccgatgagtgtctgtgtttcatagtttataattctttctatgttctattcttttaa |
22879389 |
T |
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| Q |
101 |
tgatgnnnnnnnn-----gtgttttcgaaatgttgtttgaggtttgaatgcatgttgggatctccaagttaatctgcaaatnnnnnnntccataaaaagc |
195 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| |||||| |
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| T |
22879388 |
tgatgttttattttttttgtgttttcgaaatgttgtttgaggtttgaatgcatgttgggatctcctagctaatctgcaaataaaaaaatccatcaaaagc |
22879289 |
T |
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| Q |
196 |
atcaatgttttgatttttaaattaagatgtcactatctacccattgtttgtagaaaacaagattataatttgcataccatataacaatgacagaacagaa |
295 |
Q |
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| T |
22879288 |
aacaatgttttgatttttaaattaagatgtcactatctacccattgtttgtagaaaacaagattataatttgcataccacataacaatgacagaacagaa |
22879189 |
T |
|
| Q |
296 |
tattaactttgttgttcttttacttaattaatgataataatcctgttttctgcagggtttactgaaattatttattaattaattaacttcttggttgagt |
395 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
22879188 |
tattaactttgttgttctttgacttaattaatgataataatcctgttttctgcagggtttgctgaaattatttattaattaattaacttcttggttgagt |
22879089 |
T |
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| Q |
396 |
tttttagttttgatctttattttcacc |
422 |
Q |
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| T |
22879088 |
tttttagttttgatctttattttcacc |
22879062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 6427617 - 6427660
Alignment:
| Q |
26 |
gggacacgcctaatccaatccgaggagtgtctgtgtttcatagt |
69 |
Q |
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| T |
6427617 |
gggacacgcctaatccgatccgaggagtgtctatgcttcatagt |
6427660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 15884070 - 15884104
Alignment:
| Q |
42 |
aatccgaggagtgtctgtgtttcatagtttataat |
76 |
Q |
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| T |
15884070 |
aatccgaggagtgtctgtgtttcatagcttataat |
15884104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 11493398 - 11493360
Alignment:
| Q |
1 |
aatcacataattcagtgtaattattgggacacgcctaat |
39 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |
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| T |
11493398 |
aatcacataattcagtgtaattatatggacacgcctaat |
11493360 |
T |
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