View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18259_high_12 (Length: 295)
Name: NF18259_high_12
Description: NF18259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18259_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 393415 - 393154
Alignment:
| Q |
17 |
cattttcctcacctcaattttcaaataattgtgttatttgaacatcaaaatgcaaatatagtctttatctctctcactttttattttctataacttgaca |
116 |
Q |
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| T |
393415 |
cattttcctcaccgcaattttcaaataattatgttatttgaacatcaaaatacaaatatagtctttatctctctcactttttattttctctaacttaaca |
393316 |
T |
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| Q |
117 |
catatttcaaaaatacacaaacacctaaagacataattgtgtttgacatcaaaattttgatgtcagaaaatcatttctcattttcaaatgagaaacattg |
216 |
Q |
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| T |
393315 |
catatttcaaaaatacacaaacacctaaagacataattgtgtttgacatcaaaattttgatgtc--aaaatcatttctcattttcaaatgagaaacattg |
393218 |
T |
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| Q |
217 |
gttttactttcactctgtatatttatgaaatccgacatgcgaataaatacatataacagtataa |
280 |
Q |
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| T |
393217 |
gttttactttcactctgtatatttatgaaatccgacatgcaaataaatacatataacagtataa |
393154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 36563882 - 36563845
Alignment:
| Q |
158 |
tttgacatcaaaattttgatgtcagaaaatcatttctc |
195 |
Q |
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| T |
36563882 |
tttgacatcaaaagtttgatgtcaaaaaatcatttctc |
36563845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 35 - 220
Target Start/End: Complemental strand, 8550530 - 8550344
Alignment:
| Q |
35 |
tttcaaataattgtgttatttgaacatcaaaatgcaaatatagtctttatctctctcactttttattttctataacttgacacatatttcaaaaatacac |
134 |
Q |
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| T |
8550530 |
tttcaaataattatgttatttaaacatcaaaatacaaatatagtctttatctctctcactttttattttctctaactt-acacgtatttcaaaaatacac |
8550432 |
T |
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| Q |
135 |
--aaacacctaaagacataattgtgtttgacatcaaaattttgatgtcagaaaatcatttctcattttcaaatgagaaacattggttt |
220 |
Q |
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| T |
8550431 |
ataaacacctaaagatatcattgtgcttgacatcaaaattttgatgtcaaaaaatcatttcgcattttaaaaggagaaacatttgttt |
8550344 |
T |
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