View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18259_high_17 (Length: 236)
Name: NF18259_high_17
Description: NF18259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18259_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11863311 - 11863076
Alignment:
| Q |
1 |
tcgagtagctaaaaattgagttgcacttaccagattaagtagaactatgtgggatatcatagaacagttgtatactaatatttccttacaacaaattaat |
100 |
Q |
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| T |
11863311 |
tcgagtagctaaaaactgagttgcacctaccagattaagtagaactatgtgggatatcatagaacagttgtatactaatatttccttacaacaaattaat |
11863212 |
T |
|
| Q |
101 |
atcgatatttaaatgaaaaattgttga-----gtg----------ttgtatagggagaagttgaagattccttatgataaaccctacattattatacaag |
185 |
Q |
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| T |
11863211 |
atcgatatttaaatgaaaaattgttgaattttgtggtggtttattttgtatagggagaagttgaagattccttatgataaaccctacattattatacaag |
11863112 |
T |
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| Q |
186 |
gagcggggatgagcaagacaaaagttgaatggaatg |
221 |
Q |
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| T |
11863111 |
gagcggggatgagcaagacaatagttgaatggaatg |
11863076 |
T |
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