View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18259_high_4 (Length: 497)
Name: NF18259_high_4
Description: NF18259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18259_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 35907770 - 35908248
Alignment:
| Q |
1 |
acatgtgaaggttttggtgaaaatttggatgacgaaatgatttgtaggatttgccatctggcctctgggcaaccgttagaagcaactgctgttggcactc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35907770 |
acatgtgaaggttttggtgaaaatttggatgacgaaatgatttgtaggatttgccatctggcctctgggcaaccgttagaagcaactgctgttggcactc |
35907869 |
T |
|
| Q |
101 |
caaatattgctgataaaagtacaggtttgattatgcttggttgtgcatgtaaagatgagctaggaatcgcacacagccattgcgctgaggcatggttcaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35907870 |
caaatattgctgataaaagtacaggtttgattatgcttggttgtgcatgtaaagatgagctaggaatcgcacacagccattgcgctgaggcatggttcaa |
35907969 |
T |
|
| Q |
201 |
gattaaaggaaacaggtaactttttcttttgttaatgtctgttcattactagttcttagaataatatttatttatttatgtgtgcatttgagttctgcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35907970 |
gattaaaggaaacaggtaactttttcttttgttaatgtctgttcattactagttcttagaataatatttatttatttatgtgtgcatttgagttctgcaa |
35908069 |
T |
|
| Q |
301 |
taatgcttacaatgttgacattgtgtattttgaacaatgctatagggactaaacagacctttaagttcttattacttaataatccaactaggaatgatat |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
35908070 |
taatgcttacaatgttgacattgtgtattttgaacaatgctatagggactaaacagacctttaagttctcattacttaataatccgactaggaatgatat |
35908169 |
T |
|
| Q |
401 |
ctagaaagaaaataaacctattagcattgcattannnnnnnnnatgtataatctctatatattctgtaataatacttggt |
480 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
35908170 |
ctagaaagaaaataaacctattagcattgcatta-ttttttttatgtataatctctatatattctgtaataatacttggt |
35908248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 35915371 - 35915598
Alignment:
| Q |
17 |
gtgaaaatttggatgacgaaatgatttgtag-gatttgccatctggcctctgggcaaccgttagaagcaa---------ctgctgttggcactccaaata |
106 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||| | | |
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| T |
35915371 |
gtgaaaatttggatgatgaaatgatttgtagagatttctcatctggactctgagcaaccgttagaagcaagtcaagcaactgctgttggcactccacaca |
35915470 |
T |
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| Q |
107 |
ttgctgataaaagtacaggtttgattatgcttggt---tgtgcatgtaaagatgagctaggaatcgcacacagccattgcgctgaggcatggttcaagat |
203 |
Q |
| |
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|||| |||||| ||||| |||||||||||||||| ||||||||||||||||| |||||||| |||| || |||||||||||||||||||||||||| |
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| T |
35915471 |
gtgctaataaaaatacagatttgattatgcttggtggttgtgcatgtaaagatgaactaggaattgcacgaagtcattgcgctgaggcatggttcaagat |
35915570 |
T |
|
| Q |
204 |
taaaggaaacaggtaactttttcttttg |
231 |
Q |
| |
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||||||||||| ||||||||||||||| |
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| T |
35915571 |
taaaggaaacaaataactttttcttttg |
35915598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 33911163 - 33911596
Alignment:
| Q |
1 |
acatgtgaaggttttggtgaaaatttggatgacgaaatgatttgtaggatttgccatctggcctctgggcaaccgttagaagcaactgctgttggcactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33911163 |
acatgtgaaggttttggtgaaaatttggatgacgaaatgatttgtaggatttgccatctggcctctgggcaaccgttagaagcaactgctgttggcactc |
33911262 |
T |
|
| Q |
101 |
caaatattgctgataaaagtacaggtttgattatgcttggttgtgcatgtaaagatgagctaggaatcgcacacagccattgcgctgaggcatggttcaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33911263 |
caaatattgctgataaaagtacaggtttgattatgcttggttgtgcatgtaaagatgagctaggaatcgcacacagccattgcgctgaggcatggttcaa |
33911362 |
T |
|
| Q |
201 |
gattaaaggaaacaggtaactttttcttttgttaatgtctgttcattactagttcttagaataatatttatttatttatgtgtgcatttgagttctgcaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
33911363 |
gattaaaggaaacaggtaactttttcttttgttaatgtctgttcattactaattcttagaataatgtttatttatttatgtgtgcatttgagttctgcaa |
33911462 |
T |
|
| Q |
301 |
taatgcttacaatgttgacattgtgtattttgaacaatgctatagggactaaacagacctttaagttcttattacttaataatccaactaggaatgatat |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33911463 |
taatgcttacaatgttgacattgtgtattttgaacaatgctatagggactaaacagacctttaagttctcgttacttaataatccaactaggaatgatat |
33911562 |
T |
|
| Q |
401 |
ctagaaagaaaataaacctattagcattgcatta |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
33911563 |
ctagaaagaaaataaacctattagcattgcatta |
33911596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 75 - 260
Target Start/End: Complemental strand, 46538014 - 46537834
Alignment:
| Q |
75 |
gttagaagcaactgctgttggcactccaaatattgctgataaaagtacaggtttgattatgcttggttgtgcatgtaaagatgagctaggaatcgcacac |
174 |
Q |
| |
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||||||||||| ||||||||||| |||||||| |||| |||| ||| | |||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
46538014 |
gttagaagcaaatgctgttggcaatccaaatagtgctaataatggtaaatgtttgattatgcttggttgtgcatgtaaagatgagctaggcattgcacac |
46537915 |
T |
|
| Q |
175 |
agccattgcgctgaggcatggttcaagatt-aaaggaaacaggtaactttttcttttgttaatgtctgttcattactagttcttaga |
260 |
Q |
| |
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|||||||||||||||||||| ||| ||||| |||||||||| |||| |||||||||||| |||||||||||||||| |||| |
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| T |
46537914 |
agccattgcgctgaggcatgtttctagattaaaaggaaacacgtaa------tttttgttaatgtttgttcattactagttcgtaga |
46537834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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