View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18259_high_8 (Length: 382)
Name: NF18259_high_8
Description: NF18259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18259_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 12 - 367
Target Start/End: Original strand, 47573377 - 47573739
Alignment:
| Q |
12 |
aagaatacgttgtcttatagccttcaacgacactaaacattataaccacttccttgatagaatggaatatagaaaaatgaagaaaaaagcataaaagaag |
111 |
Q |
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| T |
47573377 |
aagaatacgttgtcttatagccttcaacaacactaaacattataaccacttccttgatagaatggaatatagaaaaatgaagaaaaaagcataaaagaag |
47573476 |
T |
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| Q |
112 |
atatttccagtcaatcaaagatgtttatttggagaagagaggggaatcaggaaatttccacccataatcaaatacacaaatattcgtagtgcataatagt |
211 |
Q |
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| T |
47573477 |
atatttccagtcaatcaaagatgtttatttggagaagagaggggaatcaggaaatttccacccttaatcaaatacacaaatattcgtagtgcataatagt |
47573576 |
T |
|
| Q |
212 |
gacccctaatatcagttttcttcttattttcaacaatcaagagaaatagctcaaaagataaaattcttaccagtttatgaaatcttagttttttagctgc |
311 |
Q |
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| T |
47573577 |
gacccctaatatcagttttcttcttattttcaacaatcaagagaaatagctcaaaagataaaattcttaccagtttatgaaatcttagttttttagctgc |
47573676 |
T |
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| Q |
312 |
ataatca-------ttttctcatttttcttaatgaaaattgacaatgacacaaggttgatatt |
367 |
Q |
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| T |
47573677 |
ataatcatcagttttcttctcatttttcttaatgaaaattgacaatgacacaaggttgatatt |
47573739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 232 - 371
Target Start/End: Original strand, 47566714 - 47566856
Alignment:
| Q |
232 |
ttcttattttcaacaatcaagagaaatagctcaaaagataaaattcttaccagtttatgaaatcttag-ttttttagctgcataatcattttctcatttt |
330 |
Q |
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| T |
47566714 |
ttcttcttttcattaattaagagaaatagctcaaaagataaaattctaaccagtttaagaaatatttgtttttttagctatataatcattttctcatttt |
47566813 |
T |
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| Q |
331 |
tcttaatgaaaattgacaatgacacaaggt--tgatattgatg |
371 |
Q |
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| T |
47566814 |
tcttaaaggaaactgaatatgacacaaggtactgatattgatg |
47566856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 47566305 - 47566411
Alignment:
| Q |
41 |
acactaaacattataaccacttccttgatagaatggaatatagaaaaatgaagaaaaaagcataaaagaagatatttccagtcaatcaaagatgtttatt |
140 |
Q |
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| T |
47566305 |
acactatacattctaaccacttccttgatagaatggaatatagaaaaacgaggaaaaga--agaaaacaaaatactttcaatccatcatagatgtttatt |
47566402 |
T |
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| Q |
141 |
tggagaaga |
149 |
Q |
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|||||||| |
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| T |
47566403 |
aggagaaga |
47566411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 47570980 - 47571040
Alignment:
| Q |
31 |
gccttcaacgacactaaacattataaccacttccttgatagaatggaatatagaaaaatga |
91 |
Q |
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| T |
47570980 |
gccttcagcaacactatacattctaaccatttccttgatagaatggaatacagaaaaatga |
47571040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 322
Target Start/End: Original strand, 47583311 - 47583395
Alignment:
| Q |
238 |
ttttcaacaatcaagagaaatagctcaaaagataaaattcttaccagtttatgaaatcttagttttttagctgcataatcatttt |
322 |
Q |
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| T |
47583311 |
ttttcatcattcaagataaatagctaaaaatataaaatacttatcagtttaagaaatatttgttagttagcagcataatcatttt |
47583395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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