View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18259_low_1 (Length: 729)
Name: NF18259_low_1
Description: NF18259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18259_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 209 - 713
Target Start/End: Complemental strand, 10748710 - 10748198
Alignment:
| Q |
209 |
tattatttatcttcaatgaaagttggtttacttcgtaaaaagttgactcatactttaaaagaacatgaactcaacnnnnnnncat---------gatcat |
299 |
Q |
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| T |
10748710 |
tattatttatcttcgatgaaagttggtttacttcgtaaaaagttgactcatactttaaaagaatatgaactcaactttctttcatcgctaacttgatcat |
10748611 |
T |
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| Q |
300 |
cttttggatgaataatttggaagtatctctgtaaacaattctttagcctttaaggtcactcttacacgaacttcaaaaacgaacacgtctaatctaatat |
399 |
Q |
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| T |
10748610 |
cttttggatgaataatttggaagtatttctataaacaattctttagactt-aaggtcacttttacacgaacttcaaaaacgaacacgtctaatctaatat |
10748512 |
T |
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| Q |
400 |
atccnnnnnnnntgaattttaatgagcaacaaaaaatgaatttcactattttaaaaaccaggaattagtttttgcatcacataaaaatatctaaaaaatt |
499 |
Q |
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| T |
10748511 |
atcgaaaaaaaatgaattttaatgagcaacaaaaaatgattttcactattttaaaaaccaggaattagtttttgcatcacataaaaatatctaaaaaatt |
10748412 |
T |
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| Q |
500 |
catattatctaataatcactttaaacttgctcttatacaaagggatccttactcttggaaggaacaaaatgaagaccagaaatcagaagaaaaggctcaa |
599 |
Q |
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| T |
10748411 |
catatcatctaataatcactttaaacttgctcttatacaaagggatccttactcttggaaggaacaaattgaagaccagaaatcagaagaaaaggatcaa |
10748312 |
T |
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| Q |
600 |
gctgacaaattaataaaccaattctagctggtaacaaaacaaaatgttggctcgttgagtgaaagatgaaactaacaaaataaattcatagtttgatgaa |
699 |
Q |
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| T |
10748311 |
gctgacaaattaataaaccaattctagctggtaacaaaacaaaatgttggctcgttgagtgaaagatgaaactaacaaaataaattcatagtttgatgaa |
10748212 |
T |
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| Q |
700 |
catgtatatataat |
713 |
Q |
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| T |
10748211 |
catgtatatataat |
10748198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 10749141 - 10749049
Alignment:
| Q |
29 |
tgttaggttcataggagtgaaaattgtatcatttttatgttttatttataccacattctaaggaaaaacttattgtgcttccgatgctttgtt |
121 |
Q |
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| T |
10749141 |
tgttaggttcataggagtgaaaattgtatcatttttaagttttatttataccacattctaaggaaaaacttattgtggttccgatgctttgtt |
10749049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 10749187 - 10749156
Alignment:
| Q |
1 |
aaagatcaattgattagtttaagtttagtgtt |
32 |
Q |
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| T |
10749187 |
aaagatcaattgattagtttaagtttagtgtt |
10749156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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