View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18259_low_24 (Length: 212)
Name: NF18259_low_24
Description: NF18259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18259_low_24 |
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| [»] chr8 (4 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 2041069 - 2040871
Alignment:
| Q |
14 |
agatgaaagaaaaaagagtttcgttcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgc |
113 |
Q |
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| T |
2041069 |
agatgaaagaaaaaagagtttcattcacttggttgcagctgtatgaggctaaggtcaaaagagtggctcagactgagaatgaagcagttgatcgactcgc |
2040970 |
T |
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| Q |
114 |
gcaacgctacaaggaagaagatgcaagaaaacaaagcaggaaaatcaaaacatgcaccaaacttccacccactgaaagaagattttgtggagataatgg |
212 |
Q |
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| T |
2040969 |
gcaacgctacaaggaagaagatgcaagaaaacaaagcaggaaaatcaaaacatgcaccaaacttccacccagcgaaagaagattttgtggagataatgg |
2040871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 1357709 - 1357895
Alignment:
| Q |
14 |
agatgaaagaaaaaagagtttcgttcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgc |
113 |
Q |
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| T |
1357709 |
agatgaaagaaaaaagagtttcattcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgc |
1357808 |
T |
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| Q |
114 |
gcaacgctacaaggaagaagatgcaagaaaacaaagcaggaaaatcaaaacatgcaccaaacttccacccactgaaagaagattttg |
200 |
Q |
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| T |
1357809 |
gcaacgctacaaggaagaagatgcaagaaaacaaagcaggcaaatcaaaacatgcaccaaacttccaccaagtaaaagaagattttg |
1357895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 39 - 212
Target Start/End: Original strand, 1352600 - 1352773
Alignment:
| Q |
39 |
cacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaaggaagaagatgca |
138 |
Q |
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| T |
1352600 |
cacttggttgcagttgtatgaggctaaagtcaaaaaaatggctcgggctgagaatgaagcagttgatcgactcacgaaacgctacaaggaagaagatgca |
1352699 |
T |
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| Q |
139 |
agaaaacaaagcaggaaaatcaaaacatgcaccaaacttccacccactgaaagaagattttgtggagataatgg |
212 |
Q |
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| T |
1352700 |
agaaaacaaagcaggcaaatcaaaacatgcaccaaacttccacccagtgaaagaagattttgtggagataatgg |
1352773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 39 - 212
Target Start/End: Original strand, 1364551 - 1364724
Alignment:
| Q |
39 |
cacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaaggaagaagatgca |
138 |
Q |
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| T |
1364551 |
cacttggttgcagttgtatgaggctaaagtcaaaaaaatggctcgggctgagaatgaagcagttgatcgactcacgcaacgctacaaggaagaagatgca |
1364650 |
T |
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| Q |
139 |
agaaaacaaagcaggaaaatcaaaacatgcaccaaacttccacccactgaaagaagattttgtggagataatgg |
212 |
Q |
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| T |
1364651 |
agaaaacaaagcaggcaaatcaaaacatgcaccaaacttccaccaagtaaaagaagattttgtggagatgatgg |
1364724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 36717621 - 36717813
Alignment:
| Q |
14 |
agatgaaagaaaaaagagtttcgttcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgc |
113 |
Q |
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| T |
36717621 |
agatgaaagaaaaaagagtttcattcacttggttgcagctgtatgaggctaaggtaaaaaaaatggctcaggctgagaatgaagcagttgatcgactcgc |
36717720 |
T |
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| Q |
114 |
gcaacgctacaaggaagaagatgcaagaaaacaaagcaggaaaatcaaaacatgcaccaaacttccacccactgaaagaagattttgtggaga |
206 |
Q |
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| T |
36717721 |
gcaacgctacaaggaagaagatgcaagaaaacaaagcaggaaaataaaaacatgcaccatagttccacctaataaaagaagattttctggaga |
36717813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 46 - 212
Target Start/End: Complemental strand, 24619969 - 24619803
Alignment:
| Q |
46 |
ttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaaggaagaagatgcaagaaaac |
145 |
Q |
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||||||||| || | |||||||| |||||| | |||||| | | ||||||||||||||||||| | ||||| |||| |||||||||||||||||||||| |
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| T |
24619969 |
ttgcagctgaataaagctaaggtaaaaaaaatagctcaggttaaaaatgaagcagttgatcgacccacgcaatgctaaaaggaagaagatgcaagaaaac |
24619870 |
T |
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| Q |
146 |
aaagcaggaaaatcaaaacatgcaccaaacttccacccactgaaagaagattttgtggagataatgg |
212 |
Q |
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| T |
24619869 |
aaagcaggaaaataaaaacatgcaccaaaattccacctagtaaaagaagattgtgtggaggtaatgg |
24619803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 18179711 - 18179644
Alignment:
| Q |
59 |
aggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaag |
126 |
Q |
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| T |
18179711 |
aggctaagggaaaagaagtggctcaggctgagaatgaagcaattgatcgactcagggaacgctacaag |
18179644 |
T |
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