View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18259_low_5 (Length: 437)
Name: NF18259_low_5
Description: NF18259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18259_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 10201330 - 10201747
Alignment:
| Q |
1 |
gaaaatgtttacaaacaaccatacaacaattgaaccacaagaaatggaagatgaacttaaaattttggcttgtgtgtatgatcctcgacaagtatctgcg |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10201330 |
gaaaatgttttcaaacaaccatacaacaattgaaccacaagaaatggaagatgaacttaaaattttggcttgtgtgtatgatcctcgacaagtatctgcg |
10201429 |
T |
|
| Q |
101 |
atactagccacaatactagcaatacatggctctaaaacatcaccttctaccacttatttaatgcacttaatagagcttgtgaagaaaatcaagtcaaact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10201430 |
atactagccacaatactagcaatacatggctctaaaacatcaccttccaccacttatttaatgcacttaatagagcttgtgaagaaaatcaagtcaaact |
10201529 |
T |
|
| Q |
201 |
tgttataccatgaaaaagaaaatggcgatatcagcgatgatgacgaagcctttggtggaaatgatgtggtggacattaataatgccctagataccttcac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10201530 |
tgttataccatgaaaaagaaaatggcgatatcagcgatgatgacgaagcctttggtggaaatgatgtggtggacattaataatgccctagataccttcac |
10201629 |
T |
|
| Q |
301 |
tgaagacacaaagattttggtccaacaaaaaaggacagtttcttcttttctaagtctgtatgaagaagtgtgcagcgaagcagaaaatcttcaagtatcg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10201630 |
tgaagacacaaagattttggtccaacaaaaaaggacagtttcttcttttctaagtctgtatgaagaagtgtgcagcgaagcagaaaatcttcaagtatcg |
10201729 |
T |
|
| Q |
401 |
attattcttcttcccttt |
418 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
10201730 |
attattcttcttcccttt |
10201747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 51740535 - 51740945
Alignment:
| Q |
1 |
gaaaatgtttacaaacaaccatacaacaattgaaccacaagaaatggaagatgaacttaaaattttggcttgtgtgtatgatcctcgacaagtatctgcg |
100 |
Q |
| |
|
||||||||| |||| ||||||||| | |||||||||||||| |||||||| || ||| ||||||||||||||| ||||||||||| |||||||| | |
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|
| T |
51740535 |
gaaaatgttctcaaataaccatacagctattgaaccacaagagatggaagacgagcttcgaattttggcttgtgtatatgatcctcgtcaagtatcatca |
51740634 |
T |
|
| Q |
101 |
atactagccacaatactagcaatacatggctctaaaacatcaccttctaccacttatttaatgcacttaatagagcttgtgaagaaaatcaagtcaaact |
200 |
Q |
| |
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||||| || |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| |||| |||||||||||||| ||||| || || | |
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|
| T |
51740635 |
atacttgcaacaatactagcaatgcatggatctaaaacatcaccttcaaccacttatttaatgcacctaattgagcttgtgaagaagatcaaatccaatt |
51740734 |
T |
|
| Q |
201 |
tgttataccatgaaaaagaaaatggcgatatcagcgatgatgacgaagcctttggtggaaatgatgtggtggacattaataatgccctagataccttcac |
300 |
Q |
| |
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| || | |||||||| ||||||| || | || || ||||| || | |||||| ||||| || || || ||||||||| | ||||| | ||||| |
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|
| T |
51740735 |
tattgtttcatgaaaaggaaaatgctgaccttagtgacgatgatga---ttatggtggcaatgacgtcgttgaaattaataattcattagatgcattcac |
51740831 |
T |
|
| Q |
301 |
tgaagacacaaagattttggtccaacaaaaaaggacagtttcttcttttctaagtctgtatgaagaagtgtgcagcgaagcagaaaatcttcaagtatcg |
400 |
Q |
| |
|
|| |||||||||||||||||| || |||| |||| |||| || ||||||| ||| |||||||||| || |||| ||||| ||| ||||||||||||| |
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|
| T |
51740832 |
tgcagacacaaagattttggttcaccaaagaagggcagtatcatcttttccaagcttgtatgaagatgtttgcaatgaagctgaagatcttcaagtatca |
51740931 |
T |
|
| Q |
401 |
attattcttcttcc |
414 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
51740932 |
attatccttcttcc |
51740945 |
T |
|
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