View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18259_low_6 (Length: 434)
Name: NF18259_low_6
Description: NF18259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18259_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Original strand, 54816822 - 54817229
Alignment:
| Q |
18 |
attcaattctttgattctattcttaagattttggaattttcctgctttcacatccccaccaggtccacgcacattcatcttattaattcnnnnnnncctt |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54816822 |
attcaattctttgattctgttcttaagattttggaatttttctgctttcacatccccaccaggtccacgcacattcatcttattaattctttttttcctt |
54816921 |
T |
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| Q |
118 |
tccacttttatccaatcaccatgcaaaaattccggatcaccattaatgcttaaattaacagctttggtcgaaatctcttcaatgattactcctgatattc |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54816922 |
tccacttttatccaatcaccatgcaaaaattctggatcaccattaatgcttaaattaacagctttggtcgaaatctcttcaatgattactcctgatattc |
54817021 |
T |
|
| Q |
218 |
tgctcgcgacattaatttccttaccgtttttgttgtgaaccgtttctgtttcaacttcaggcccggcggtcaccggagcaaccatcgattcaggtgtaac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
54817022 |
tgctcgcgacattaatttccttaccgtttttgttgtgaaccgtttctgtttcaacttcaggcccggcggtcgccggagcaaccatcgattcaggtgtaac |
54817121 |
T |
|
| Q |
318 |
tgtcgtagatttgagattgtggctgcaatctttcaaaacatgaccataacaaccacactgagtgcaaataacatgcaaaccttcatactgaacatgatac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54817122 |
tgtcgtagatttgagattgtggctgcaatctttcaaaacatgaccataacaaccacactgagtgcaaataacatgcaaaccttcatactgaacatgatac |
54817221 |
T |
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| Q |
418 |
cattctcc |
425 |
Q |
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|||||||| |
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| T |
54817222 |
cattctcc |
54817229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 361 - 425
Target Start/End: Complemental strand, 23944951 - 23944887
Alignment:
| Q |
361 |
ccataacaaccacactgagtgcaaataacatgcaaaccttcatactgaacatgataccattctcc |
425 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||||| |
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| T |
23944951 |
ccataacaaccacactgagtgcaaataacatgcaatccctcatactgaacgtgataccactctcc |
23944887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 23945205 - 23945156
Alignment:
| Q |
115 |
ctttccacttttatccaatcaccatgcaaaaattccggatcaccattaat |
164 |
Q |
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||||||||||| ||||| |||||||||||| | ||||| ||||||||||| |
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| T |
23945205 |
ctttccactttaatccactcaccatgcaaagaatccggttcaccattaat |
23945156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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