View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18259_low_7 (Length: 426)
Name: NF18259_low_7
Description: NF18259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18259_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 47073420 - 47073027
Alignment:
| Q |
18 |
ataacggtgagaaagacacaaagtactatgatttaagaatagaattttgatacatttttcgtgtaaaactttttacactgtcaaacaatcacggtcaatc |
117 |
Q |
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| T |
47073420 |
ataacggtgagaaagacacaaagtactatgatttaagaatagaattttgatacatttttagtgtaaaactttttacactgtcaaacaatcacggtcaatc |
47073321 |
T |
|
| Q |
118 |
atatatctatgtgactttcaaatagttttgattaaagtcaaacattttaataatccgacgattaaaattgattgacagtatgcaaaaagtttacactaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47073320 |
atatatctatgtgactttcaaatagttttgattaaagtcaaacattttaataatccgacgattaaaattgattgacagtatgcaaaaagtttacactaac |
47073221 |
T |
|
| Q |
218 |
agcgcatataaattaaatccttaaaaataaccaatcaaatgtccatgatcttcccgtaggatggagttgttacggatcttcaagaaaccataaatgctgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47073220 |
agcgcatataaattaaatccttaaaaataaccaatcaaatgtccatgatcttcccgtaggatggagttgttacggatcttcaagaaaccataaatgctgt |
47073121 |
T |
|
| Q |
318 |
ggttaaagcatctgatcttcccttatcaattcttatagttggtgttggaagcactgatttcaagagcatggaggtctacttatatccttgccta |
411 |
Q |
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| T |
47073120 |
ggttaaagcatctgatcttcccttatcaattcttatagttggtgttggaagcactgatttcaagagcatggaggtttacttatatccttgccta |
47073027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 274 - 365
Target Start/End: Complemental strand, 47055139 - 47055048
Alignment:
| Q |
274 |
taggatggagttgttacggatcttcaagaaaccataaatgctgtggttaaagcatctgatcttcccttatcaattcttatagttggtgttgg |
365 |
Q |
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| T |
47055139 |
taggatggaattgttacggatcttcatgaatcaataaatgctgttgttaatgcttccgatcttcccctgtcgatacttatagttggtgttgg |
47055048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 35170010 - 35169953
Alignment:
| Q |
140 |
tagttttgattaaagtcaaacat-tttaataatccgacgattaaaattgattgacagt |
196 |
Q |
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| T |
35170010 |
tagttatgattaaagtcaaacatctttaataatctaacgattacaattgattgacagt |
35169953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 245 - 418
Target Start/End: Original strand, 18231924 - 18232097
Alignment:
| Q |
245 |
taaccaatcaaatgtccatgatcttcccgtaggatggagttgttacggatcttcaagaaaccataaatgctgtggttaaagcatctgatcttcccttatc |
344 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||| |
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| T |
18231924 |
taaccaatcaaatgtccatgatcttcccacaggatggagttgttacggatcttcaagaaaccatagattctgtggttaaagcatctgatcttccgttatc |
18232023 |
T |
|
| Q |
345 |
aattcttatagttggtgttggaagcactgatttcaagagcatggaggtctacttatatccttgcctatgcttct |
418 |
Q |
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| T |
18232024 |
gattcttatagttggtgttggaagcgctgatttcacgagcatggaggtctgcttttatcgttccctatgtttct |
18232097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 18231729 - 18231906
Alignment:
| Q |
18 |
ataacggtgagaaagacacaaagtactatgatttaagaatagaat-----tttgatacatttttcgtgtaaaactttttacactgtcaaacaatcacggt |
112 |
Q |
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|||||||||||||| |||| ||||| ||||||||||| |||| | |||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
18231729 |
ataacggtgagaaatacactgagtacaatgatttaagattagagtatagttttgatacatttttagtgtaaaacattttacactgtcaaacaatcacggt |
18231828 |
T |
|
| Q |
113 |
caatcatatatctatgtgactttcaaatagttttgattaaagtcaaacattttaataatccgacgattaaaattgattgacagt |
196 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||| ||||||||||| |||||||| |||||||| ||||| |
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| T |
18231829 |
caatcatatatctatgtgacttcaaaatagttttgatt------aaactttttaataatctgacgattataattgattcacagt |
18231906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 380
Target Start/End: Complemental strand, 40131992 - 40131886
Alignment:
| Q |
274 |
taggatggagttgttacggatcttcaagaaaccataaatgctgtggttaaagcatctgatcttcccttatcaattcttatagttggtgttggaagcactg |
373 |
Q |
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|||||||||||||| |||||||| |||||||| | | |||| | ||||||||||| || || || |||||||| ||||| ||||| || ||| | ||| |
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| T |
40131992 |
taggatggagttgtgacggatctccaagaaacaaaagatgcacttgttaaagcatcggacctaccattatcaatccttatcgttggcgtaggaggagctg |
40131893 |
T |
|
| Q |
374 |
atttcaa |
380 |
Q |
| |
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||||||| |
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|
| T |
40131892 |
atttcaa |
40131886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 726758 - 726717
Alignment:
| Q |
61 |
attttgatacatttttc-gtgtaaaactttttacactgtcaa |
101 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
726758 |
attttgatacatttttcagtgtaaaacgttttacactgtcaa |
726717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 49601488 - 49601440
Alignment:
| Q |
60 |
aattttgatacatttttcgtgtaaaactttttacactgtcaaacaatca |
108 |
Q |
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||||||||| |||| || ||||||| |||||||||||||||| |||||| |
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| T |
49601488 |
aattttgattcattgttggtgtaaatctttttacactgtcaaccaatca |
49601440 |
T |
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