View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18259_low_9 (Length: 343)
Name: NF18259_low_9
Description: NF18259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18259_low_9 |
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| [»] scaffold0143 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 44546173 - 44545853
Alignment:
| Q |
1 |
agagaaagagtgagagagnnnnnnnttgttatcacaagttgcaaaaatatatataaattgaactttatttccaaaaacaaattttacactgtcatctagt |
100 |
Q |
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| T |
44546173 |
agagaaagagtgagagagaaaaaaattgttatgacaagttgcaaaaatata----aattgaactttatttccaaaaacaaattttacactgtcatctagt |
44546078 |
T |
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| Q |
101 |
ataatcatctcttcaaatcactccactacatgtcactttaatgatatgacatgcataaatagttgattcatattagatgttagagtaaactacgaataaa |
200 |
Q |
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| T |
44546077 |
ataatcatctcttcaaatcactccactacatgtcactttaatgatatgacatgcatcaatagttgattcatattagatgttagagtaaactacgaataaa |
44545978 |
T |
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| Q |
201 |
ttcattaaacttttgataaaaacaagaataggtaaagaatgcgtactggaactggaactggaactggaagcatcaagttctttaacagccttcatgaatt |
300 |
Q |
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| T |
44545977 |
ttgattaaacttttgataaaaacaagaataggtaaagaatgcgtactggaactggaactggaactggaagcatcaagttctttaacagccttcatgaatt |
44545878 |
T |
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| Q |
301 |
gctcatgtaattctaaagaccatac |
325 |
Q |
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| T |
44545877 |
gctcatgtaattctaaagaccatac |
44545853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 33481370 - 33481291
Alignment:
| Q |
113 |
tcaaatcactccactacatgtcactttaatgatatgacatgcataaatagttgattcatattagatgttagagtaaacta |
192 |
Q |
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| T |
33481370 |
tcaaatcaccccactacactacacttacatggtatgacgtggagaaatagttaattcatattagatgttagtgtaaacta |
33481291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0143 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0143
Description:
Target: scaffold0143; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 5311 - 5390
Alignment:
| Q |
113 |
tcaaatcactccactacatgtcactttaatgatatgacatgcataaatagttgattcatattagatgttagagtaaacta |
192 |
Q |
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||||||||| |||||||| ||||| ||| |||||| || | |||||||| |||||||||||||||||| |||||||| |
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| T |
5311 |
tcaaatcaccccactacactacacttacatggtatgacgtggagaaatagttaattcatattagatgttagtgtaaacta |
5390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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