View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18260_high_2 (Length: 539)

Name: NF18260_high_2
Description: NF18260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18260_high_2
NF18260_high_2
[»] chr2 (10 HSPs)
chr2 (9-517)||(30019339-30019847)
chr2 (9-517)||(30040848-30041356)
chr2 (9-517)||(30234986-30235494)
chr2 (9-525)||(30110326-30110844)
chr2 (5-525)||(30077859-30078378)
chr2 (289-525)||(30121892-30122130)
chr2 (5-168)||(30136958-30137121)
chr2 (32-168)||(30045941-30046077)
chr2 (119-165)||(39324796-39324842)
chr2 (119-164)||(42352251-42352296)
[»] chr1 (4 HSPs)
chr1 (253-520)||(17439330-17439597)
chr1 (90-176)||(8245431-8245517)
chr1 (90-165)||(42106999-42107074)
chr1 (103-165)||(1035397-1035458)
[»] chr7 (3 HSPs)
chr7 (253-520)||(15055609-15055876)
chr7 (105-171)||(38735907-38735973)
chr7 (123-176)||(31446665-31446718)
[»] chr8 (1 HSPs)
chr8 (105-165)||(3771638-3771698)
[»] chr5 (7 HSPs)
chr5 (90-175)||(41982520-41982605)
chr5 (119-165)||(4650341-4650387)
chr5 (124-165)||(38734692-38734733)
chr5 (119-165)||(2858210-2858256)
chr5 (124-165)||(2846389-2846430)
chr5 (93-138)||(29302550-29302595)
chr5 (93-153)||(3082689-3082748)
[»] chr6 (3 HSPs)
chr6 (125-175)||(33940956-33941006)
chr6 (82-159)||(2308372-2308448)
chr6 (119-165)||(27991927-27991973)
[»] chr4 (2 HSPs)
chr4 (119-165)||(34121090-34121136)
chr4 (119-176)||(38516122-38516179)
[»] chr3 (2 HSPs)
chr3 (90-166)||(25750837-25750914)
chr3 (62-155)||(49222430-49222523)


Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 9 - 517
Target Start/End: Complemental strand, 30019847 - 30019339
Alignment:
Q  9 aaatgaaaactaaaataatattcatatttatggattagtttattaagtgtaagtcttctataatcacaacataaaataaacaatatttagacatactcac 108  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30019847 aaatgaaaactaaaataatattgatatttatggattagtttattaagtgtaagtcttctataatcacaacataaaataaacaatatttagacatactcac 30019748  T
Q  109 attaaattagaaaaattaaaacaaagataatttgatcacatcaatcaacatcatttaagttttttctcaatattgcaagagaaagaatttaggttcttgt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30019747 attaaattagaaaaattaaaacaaagataatttgatcacatcaatcaacatcatttaagttttttctcaatattgcaagagaaagaatttaggttcttgt 30019648  T
Q  209 tctaagtctgtagttgggattcttctcgtataaaaagagcaaccactctttctctaagatggtgccttaattggttaatctcctccaaccaccctggact 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30019647 tctaagtctgtagttgggattcttctcgtataaaaagagcaaccactctttctctaagatggtgccttaattggttaatctcctccaaccaccctggact 30019548  T
Q  309 tgttgtcattgaaacagactcggaatctaatgttaaatgcttgcaagcgaagatgaaagttgcagatttagacttgattatatctgattgtattcatttt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||    
T  30019547 tgttgtcattgaaacagactcggaatctaatgttaaatgcttgcaagcgaagctgaaatttgcagatttatacttgattatatctgattgtattcatttt 30019448  T
Q  409 ctttacttacttcctaatgttagtgttgcttttgttggtagaaccaagaacaaagctgcccatggcttagttaaagttgttgttagtttgggttctaaat 508  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30019447 ctttccttacttcctaatgttagtgttgcttttgttggtagaaccaagaacaaagctgcccatggcttagttaaagttgttgttagtttgggttctaaat 30019348  T
Q  509 catgggtgg 517  Q
    |||||||||    
T  30019347 catgggtgg 30019339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 9 - 517
Target Start/End: Original strand, 30040848 - 30041356
Alignment:
Q  9 aaatgaaaactaaaataatattcatatttatggattagtttattaagtgtaagtcttctataatcacaacataaaataaacaatatttagacatactcac 108  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30040848 aaatgaaaactaaaataatattgatatttatggattagtttattaagtgtaagtcttctataatcacaacataaaataaacaatatttagacatactcac 30040947  T
Q  109 attaaattagaaaaattaaaacaaagataatttgatcacatcaatcaacatcatttaagttttttctcaatattgcaagagaaagaatttaggttcttgt 208  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30040948 attaaattagaaaaattaaaacaaaaataatttgatcacatcaatcaacatcatttaagttttttctcaatattgcaagagaaagaatttaggttcttgt 30041047  T
Q  209 tctaagtctgtagttgggattcttctcgtataaaaagagcaaccactctttctctaagatggtgccttaattggttaatctcctccaaccaccctggact 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30041048 tctaagtctgtagttgggattcttctcgtataaaaagagcaaccactctttctctaagatggtgccttaattggttaatctcctccaaccaccctggact 30041147  T
Q  309 tgttgtcattgaaacagactcggaatctaatgttaaatgcttgcaagcgaagatgaaagttgcagatttagacttgattatatctgattgtattcatttt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||    
T  30041148 tgttgtcattgaaacagactcggaatctaatgttaaatgcttgcaagcgaagctgaaatttgcagatttatacttgattatatctgattgtattcatttt 30041247  T
Q  409 ctttacttacttcctaatgttagtgttgcttttgttggtagaaccaagaacaaagctgcccatggcttagttaaagttgttgttagtttgggttctaaat 508  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30041248 ctttccttacttcctaatgttagtgttgcttttgttggtagaaccaagaacaaagctgcccatggcttagttaaagttgttgttagtttgggttctaaat 30041347  T
Q  509 catgggtgg 517  Q
    |||||||||    
T  30041348 catgggtgg 30041356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 9 - 517
Target Start/End: Original strand, 30234986 - 30235494
Alignment:
Q  9 aaatgaaaactaaaataatattcatatttatggattagtttattaagtgtaagtcttctataatcacaacataaaataaacaatatttagacatactcac 108  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30234986 aaatgaaaactaaaataatattgatatttatggattagtttattaagtgtaagtcttctataatcacaacataaaataaacaatatttagacatactcac 30235085  T
Q  109 attaaattagaaaaattaaaacaaagataatttgatcacatcaatcaacatcatttaagttttttctcaatattgcaagagaaagaatttaggttcttgt 208  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30235086 attaaattagaaaaattaaaacaaaaataatttgatcacatcaatcaacatcatttaagttttttctcaatattgcaagagaaagaatttaggttcttgt 30235185  T
Q  209 tctaagtctgtagttgggattcttctcgtataaaaagagcaaccactctttctctaagatggtgccttaattggttaatctcctccaaccaccctggact 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30235186 tctaagtctgtagttgggattcttctcgtataaaaagagcaaccactctttctctaagatggtgccttaattggttaatctcctccaaccaccctggact 30235285  T
Q  309 tgttgtcattgaaacagactcggaatctaatgttaaatgcttgcaagcgaagatgaaagttgcagatttagacttgattatatctgattgtattcatttt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||    
T  30235286 tgttgtcattgaaacagactcggaatctaatgttaaatgcttgcaagcgaagctgaaatttgcagatttatacttgattatatctgattgtattcatttt 30235385  T
Q  409 ctttacttacttcctaatgttagtgttgcttttgttggtagaaccaagaacaaagctgcccatggcttagttaaagttgttgttagtttgggttctaaat 508  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30235386 ctttccttacttcctaatgttagtgttgcttttgttggtagaaccaagaacaaagctgcccatggcttagttaaagttgttgttagtttgggttctaaat 30235485  T
Q  509 catgggtgg 517  Q
    |||||||||    
T  30235486 catgggtgg 30235494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 9 - 525
Target Start/End: Original strand, 30110326 - 30110844
Alignment:
Q  9 aaatgaaaactaaaataatattcatatttatggattagtttattaagtgtaagtcttctataatcacaacataaaataaacaatatttagacatactcac 108  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30110326 aaatgaaaactaaaataatattgatatttatggattagtttattaagtgtaagtcttctataatcacaacataaaataaacaatatttagacatactcac 30110425  T
Q  109 attaaattagaaaaattaaaacaaagataatttgatcacatcaatcaacatcatttaagttttttctcaatattgcaagagaaagaatttaggttcttgt 208  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30110426 attaaattagaaaaattaaaacaaaaataatttgatcacatcaatcaacatcatttaagttttttctcaatattgcaagagaaagaatttaggttcttgt 30110525  T
Q  209 tctaagtctgtagttgggattcttctcgtataaaaagagcaaccactctttctctaagatggtgccttaattggttaatctcctccaaccaccctggact 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30110526 tctaagtctgtagttgggattcttctcgtataaaaagagcaaccactctttctctaagatggtgccttaattggttaatctcctccaaccaccctggact 30110625  T
Q  309 tgttgtcattgaaacagactcggaatctaatgttaaatgcttgcaagcgaagatgaaagttgcagatttagacttgattatatctgattgtattcatttt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||    
T  30110626 tgttgtcattgaaacagactcggaatctaatgttaaatgcttgcaagcgaagctgaaatttgcagatttatacttgattatatctgattgtattcatttt 30110725  T
Q  409 ctttacttacttcctaatgttagtgttgcttttgttggtagaa--ccaagaacaaagctgcccatggcttagttaaagttgttgttagtttgggttctaa 506  Q
    |||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30110726 ctttccttacttcctaatgttagtgttgcttttgttggtagaacgccaagaacaaagctgcccatggcttagttaaagttgttgttagtttgggttctaa 30110825  T
Q  507 atcatgggtgggttataaa 525  Q
    |||||||||||||||||||    
T  30110826 atcatgggtgggttataaa 30110844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 5 - 525
Target Start/End: Complemental strand, 30078378 - 30077859
Alignment:
Q  5 actgaaatgaaaactaaaataatattcatatttatggattagtttattaagtgtaagtcttctataatcacaacataaaataaacaatatttagacatac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  30078378 actgaaatgaaaactaaaataatattcatatttatggattagtttattaagtgtaagtcttctataatcacaacataaattaaacaatttttagacatac 30078279  T
Q  105 tcacattaaattagaaaaattaaaacaaagataatttgatcacatcaatcaacatcatttaagttttttctcaatattgcaagagaaagaatttaggttc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30078278 tcacattaaattagaaaaattaaaacaaagataatttgatcacatcaatcaacatcatttaagttttttctcaatattgcaagagaaagaatttaggttc 30078179  T
Q  205 ttgttctaagtctgtagttgggattcttctcgtataaaaagagcaaccactctttctctaagatggtgccttaattggttaatctcctccaaccaccctg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30078178 ttgttctaagtctgtagttgggattcttctcgtataaaaagagcaaccactctttctctaagatggtgccttaattggttaatctcctccaaccaccctg 30078079  T
Q  305 gacttgttgtcattgaaacagactcggaatctaatgttaaatgcttgcaagcgaagatgaaagttgcagatttagacttgattatatctgattgtattca 404  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||||||    
T  30078078 gacttgttatcattgaaacagactcggaatctaatgttaaatgcttgcaagcgaagatgaaagttgca---ttggacttgattatatctgattgtattca 30077982  T
Q  405 ttttctttacttacttcctaatgttagtgttgcttttgttggtagaaccaagaacaa--agctgcccatggcttagttaaagttgttgttagtttgggtt 502  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||    
T  30077981 ttttctttacatacttcctaatgttagtgttgcttttgttggtagaaccaagaacaaagagctgcccatggcttagttaaatttgttgttagtttgggtt 30077882  T
Q  503 ctaaatcatgggtgggttataaa 525  Q
    |||||||||||||||||||||||    
T  30077881 ctaaatcatgggtgggttataaa 30077859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 289 - 525
Target Start/End: Original strand, 30121892 - 30122130
Alignment:
Q  289 tcctccaaccaccctggacttgttgtcattgaaacagactcggaatctaatgttaaatgcttgcaagcgaagatgaaagttgcagatttagacttgatta 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30121892 tcctccaaccaccctggacttgttgtcattgaaacagactcggaatctaatgttaaatgcttgcaagcgaagatgaaagttgcagatttggacttgatta 30121991  T
Q  389 tatctgattgtattcattttctttacttacttcctaatgttagtgttgcttttgttggtagaa--ccaagaacaaagctgcccatggcttagttaaagtt 486  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  30121992 tatctgattgtattcattttctttccttacttcctaatgttagtgttgcttttgttggtagaacgccaagaacaaagctgcccatggcttagttaaagtt 30122091  T
Q  487 gttgttagtttgggttctaaatcatgggtgggttataaa 525  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30122092 gttgttagtttgggttctaaatcatgggtgggttataaa 30122130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 30136958 - 30137121
Alignment:
Q  5 actgaaatgaaaactaaaataatattcatatttatggattagtttattaagtgtaagtcttctataatcacaacataaaataaacaatatttagacatac 104  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30136958 actgaaatgaaaactaaaataatattgatatttatggattagtttattaagtgtaagtcttctataatcacaacataaaataaacaatatttagacatac 30137057  T
Q  105 tcacattaaattagaaaaattaaaacaaagataatttgatcacatcaatcaacatcatttaagt 168  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30137058 tcacattaaattagaaaaattaaaacaaaaataatttgatcacatcaatcaacatcatttaagt 30137121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 30045941 - 30046077
Alignment:
Q  32 atatttatggattagtttattaagtgtaagtcttctataatcacaacataaaataaacaatatttagacatactcacattaaattagaaaaattaaaaca 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30045941 atatttatggattagtttattaagtgtaagtcttctataatcacaacataaaataaacaatatttagacatactcacattaaattagaaaaattaaaaca 30046040  T
Q  132 aagataatttgatcacatcaatcaacatcatttaagt 168  Q
    || ||||||||||||||||||||||||||||||||||    
T  30046041 aaaataatttgatcacatcaatcaacatcatttaagt 30046077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 39324796 - 39324842
Alignment:
Q  119 aaaaattaaaacaaagataatttgatcacatcaatcaacatcattta 165  Q
    |||| |||||||||| |||||| ||||||||||||||| ||||||||    
T  39324796 aaaatttaaaacaaaaataattagatcacatcaatcaatatcattta 39324842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 42352296 - 42352251
Alignment:
Q  119 aaaaattaaaacaaagataatttgatcacatcaatcaacatcattt 164  Q
    ||||||||||||||| ||||| | |||||||||||||||| |||||    
T  42352296 aaaaattaaaacaaaaataatgtaatcacatcaatcaacaacattt 42352251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 5e-85; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 253 - 520
Target Start/End: Original strand, 17439330 - 17439597
Alignment:
Q  253 actctttctctaagatggtgccttaattggttaatctcctccaaccaccctggacttgttgtcattgaaacagactcggaatctaatgttaaatgcttgc 352  Q
    |||||| || |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||| || ||||    
T  17439330 actcttgctttaagatggtgccttaattggctaatctcctccaaccatcctggacttgttgtcattgaaactgactcggaatctactgttaagtgtttgc 17439429  T
Q  353 aagcgaagatgaaagttgcagatttagacttgattatatctgattgtattcattttctttacttacttcctaatgttagtgttgcttttgttggtagaac 452  Q
    ||| |||| ||||| |||| ||||| || |||||||| ||||||||||||||| |||| |  ||| |||||||||||||||||||||||||| |||||||    
T  17439430 aagggaagctgaaaattgctgatttggatttgattatctctgattgtattcatcttctgtctttaattcctaatgttagtgttgcttttgttagtagaac 17439529  T
Q  453 caagaacaaagctgcccatggcttagttaaagttgttgttagtttgggttctaaatcatgggtgggtt 520  Q
    ||| ||||| |||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||    
T  17439530 caaaaacaaggctgcccatggcttggttaaagttgctgttagtttaggttctaaatcttgggtgggtt 17439597  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 8245517 - 8245431
Alignment:
Q  90 aatatttagacatactcacattaaattagaaaaattaaaacaaagataatttgatcacatcaatcaacatcatttaagttttttctc 176  Q
    |||||||||| | |||||||| ||||   |||| || ||||||| ||||||  |||||||||||||||||||||||| ||| |||||    
T  8245517 aatatttagaaacactcacatcaaatggaaaaattttaaacaaaaataattaaatcacatcaatcaacatcatttaattttattctc 8245431  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 42106999 - 42107074
Alignment:
Q  90 aatatttagacatactcacattaaattagaaaaattaaaacaaagataatttgatcacatcaatcaacatcattta 165  Q
    ||||||| |||| |||||||| ||||   |||| |||||||||| ||||||  ||||||||||| |||||||||||    
T  42106999 aatatttggacacactcacatcaaatggaaaaatttaaaacaaaaataattaaatcacatcaattaacatcattta 42107074  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 165
Target Start/End: Original strand, 1035397 - 1035458
Alignment:
Q  103 actcacattaaattagaaaaattaaaacaaagataatttgatcacatcaatcaacatcattta 165  Q
    ||||||||||||| | ||||||||||||||| |||||| |||||||| |||| | ||||||||    
T  1035397 actcacattaaataa-aaaaattaaaacaaaaataattagatcacattaatctatatcattta 1035458  T

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Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 253 - 520
Target Start/End: Complemental strand, 15055876 - 15055609
Alignment:
Q  253 actctttctctaagatggtgccttaattggttaatctcctccaaccaccctggacttgttgtcattgaaacagactcggaatctaatgttaaatgcttgc 352  Q
    |||||| |||||||||| || ||| ||||| | |||||||||||||| || ||  ||||| | |||||||||||||| ||||||| ||| |||||  |||    
T  15055876 actcttgctctaagatgttgtcttgattggatgatctcctccaaccatccaggttttgttattattgaaacagactctgaatctactgtcaaatgtctgc 15055777  T
Q  353 aagcgaagatgaaagttgcagatttagacttgattatatctgattgtattcattttctttacttacttcctaatgttagtgttgcttttgttggtagaac 452  Q
    | |  ||| |||| || ||||| |||||  |  |||| ||||||||||| ||||||||||  ||||| || ||||| | |||||||||| || |||||||    
T  15055776 agggaaagctgaatgtagcagaattagatctagttatctctgattgtatccattttctttttttactaccaaatgtaattgttgcttttattagtagaac 15055677  T
Q  453 caagaacaaagctgcccatggcttagttaaagttgttgttagtttgggttctaaatcatgggtgggtt 520  Q
    ||||||||||||||| |||||||| ||| |||||| ||||| |||  | |||| ||| ||||||||||    
T  15055676 caagaacaaagctgctcatggcttggttgaagttgctgttaatttaagctctagatcttgggtgggtt 15055609  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 38735973 - 38735907
Alignment:
Q  105 tcacattaaattagaaaaattaaaacaaagataatttgatcacatcaatcaacatcatttaagtttt 171  Q
    |||||| |||| | |||| ||||| |||| ||||||  |||||||||||||||||||||||| ||||    
T  38735973 tcacatcaaatgaaaaaatttaaagcaaaaataattaaatcacatcaatcaacatcatttaattttt 38735907  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 31446718 - 31446665
Alignment:
Q  123 attaaaacaaagataatttgatcacatcaatcaacatcatttaagttttttctc 176  Q
    ||||||||||| |||||||  ||| ||||||||||||||||||| ||| |||||    
T  31446718 attaaaacaaaaataatttattcatatcaatcaacatcatttaattttattctc 31446665  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 3771698 - 3771638
Alignment:
Q  105 tcacattaaattagaaaaattaaaacaaagataatttgatcacatcaatcaacatcattta 165  Q
    ||||||||||| | ||||||||||||||| ||||| | |||||||||||||||||||||||    
T  3771698 tcacattaaatgaaaaaaattaaaacaaaaataatataatcacatcaatcaacatcattta 3771638  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 41982605 - 41982520
Alignment:
Q  90 aatatttagacatactcacattaaattagaaaaattaaaacaaagataatttgatcacatcaatcaacatcatttaagttttttct 175  Q
    ||||||| | || |||||||| |||| | |||| |||||||||| |||||| |||| |||||||||||||||||||  ||||||||    
T  41982605 aatatttgggcacactcacatcaaatgaaaaaatttaaaacaaaaataattagatcccatcaatcaacatcatttagtttttttct 41982520  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 4650387 - 4650341
Alignment:
Q  119 aaaaattaaaacaaagataatttgatcacatcaatcaacatcattta 165  Q
    |||| |||||||||| |||||| ||||||||||||||||||||||||    
T  4650387 aaaatttaaaacaaaaataattagatcacatcaatcaacatcattta 4650341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 38734733 - 38734692
Alignment:
Q  124 ttaaaacaaagataatttgatcacatcaatcaacatcattta 165  Q
    |||||||||| |||||| ||||||||||||||||||||||||    
T  38734733 ttaaaacaaaaataattagatcacatcaatcaacatcattta 38734692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 2858256 - 2858210
Alignment:
Q  119 aaaaattaaaacaaagataatttgatcacatcaatcaacatcattta 165  Q
    |||| |||||||||| |||| | ||||||||||||||||||||||||    
T  2858256 aaaatttaaaacaaaaataaatagatcacatcaatcaacatcattta 2858210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 2846430 - 2846389
Alignment:
Q  124 ttaaaacaaagataatttgatcacatcaatcaacatcattta 165  Q
    |||||||||| |||||| |||||| |||||||||||||||||    
T  2846430 ttaaaacaaaaataattagatcacctcaatcaacatcattta 2846389  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 29302595 - 29302550
Alignment:
Q  93 atttagacatactcacattaaattagaaaaattaaaacaaagataa 138  Q
    |||||| ||||||||||| |||||| ||||||||||||||| ||||    
T  29302595 atttaggcatactcacataaaattaaaaaaattaaaacaaaaataa 29302550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 3082689 - 3082748
Alignment:
Q  93 atttagacatactcacattaaattagaaaaattaaaacaaagataatttgatcacatcaat 153  Q
    ||||||||| |||||||| |||| | ||||||||||||||| ||||||| |||| ||||||    
T  3082689 atttagacacactcacataaaatga-aaaaattaaaacaaaaataatttaatcatatcaat 3082748  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 33941006 - 33940956
Alignment:
Q  125 taaaacaaagataatttgatcacatcaatcaacatcatttaagttttttct 175  Q
    ||||||||| ||||||| |||||||||||||||||||||||| ||| ||||    
T  33941006 taaaacaaaaataatttaatcacatcaatcaacatcatttaattttattct 33940956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 2308448 - 2308372
Alignment:
Q  82 aaataaacaatatttagacatactcacattaaattagaaaaattaaaacaaagataatttgatcacatcaatcaacat 159  Q
    ||||||| ||||||| | || |||||||| |||| | ||||||||||||||| ||||| | |||||||||||||||||    
T  2308448 aaataaaaaatatttgggcacactcacatcaaatca-aaaaattaaaacaaaaataatataatcacatcaatcaacat 2308372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 27991973 - 27991927
Alignment:
Q  119 aaaaattaaaacaaagataatttgatcacatcaatcaacatcattta 165  Q
    ||||||||||||||| ||||| | |||||||||||||||||| ||||    
T  27991973 aaaaattaaaacaaaaataatataatcacatcaatcaacatctttta 27991927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 34121090 - 34121136
Alignment:
Q  119 aaaaattaaaacaaagataatttgatcacatcaatcaacatcattta 165  Q
    |||| |||||||||| ||||| | |||||||||||||||||||||||    
T  34121090 aaaagttaaaacaaaaataatataatcacatcaatcaacatcattta 34121136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 38516179 - 38516122
Alignment:
Q  119 aaaaattaaaacaaagataatttgatcacatcaatcaacatcatttaagttttttctc 176  Q
    |||||| ||||||||  |||||  |||||||||||||||||||||||| ||| |||||    
T  38516179 aaaaataaaaacaaaattaattaaatcacatcaatcaacatcatttaattttattctc 38516122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 25750837 - 25750914
Alignment:
Q  90 aatatttagacatactcacattaaattagaaaaatt-aaaacaaaga-taatttgatcacatcaatcaacatcatttaa 166  Q
    |||||||||||| |||||||| |||| ||||||||| |||||||| | |||||  || |||||||||||||||||||||    
T  25750837 aatatttagacacactcacatcaaat-agaaaaatttaaaacaaaaaataattaaattacatcaatcaacatcatttaa 25750914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 155
Target Start/End: Complemental strand, 49222523 - 49222430
Alignment:
Q  62 tcttctataatcacaacataaaataaacaatatttagacatactcacattaaattagaaaaattaaaacaaagataatttgatcacatcaatca 155  Q
    |||| |||||||||||| | ||||||| ||| |||| | | |||||||| |||| | ||| ||||||| ||| ||| ||| |||||||||||||    
T  49222523 tcttttataatcacaactttaaataaaaaatgtttaaatacactcacatcaaatgaaaaatattaaaataaaaatagtttaatcacatcaatca 49222430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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