View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18260_low_1 (Length: 718)

Name: NF18260_low_1
Description: NF18260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18260_low_1
NF18260_low_1
[»] chr8 (17 HSPs)
chr8 (21-570)||(8105180-8105729)
chr8 (568-695)||(8105998-8106123)
chr8 (568-695)||(20876991-20877116)
chr8 (650-695)||(20875705-20875750)
chr8 (648-695)||(35367417-35367464)
chr8 (568-695)||(39888488-39888615)
chr8 (652-695)||(1949659-1949702)
chr8 (648-695)||(5554876-5554923)
chr8 (651-694)||(5555196-5555239)
chr8 (648-695)||(10108377-10108424)
chr8 (648-695)||(14820618-14820665)
chr8 (648-695)||(21147943-21147990)
chr8 (648-695)||(43851672-43851719)
chr8 (650-695)||(7689531-7689576)
chr8 (654-691)||(8104677-8104714)
chr8 (650-695)||(18044153-18044198)
chr8 (648-689)||(38726700-38726741)
[»] chr4 (9 HSPs)
chr4 (568-695)||(53896453-53896579)
chr4 (44-123)||(51028391-51028470)
chr4 (568-695)||(36887687-36887814)
chr4 (648-692)||(51029097-51029141)
chr4 (648-695)||(31218305-31218352)
chr4 (649-695)||(3018018-3018064)
chr4 (650-692)||(41947180-41947222)
chr4 (568-637)||(43313456-43313523)
chr4 (651-692)||(9516937-9516978)
[»] chr2 (12 HSPs)
chr2 (61-118)||(21481535-21481592)
chr2 (568-695)||(30958691-30958817)
chr2 (648-695)||(19251478-19251525)
chr2 (648-695)||(23806276-23806323)
chr2 (648-695)||(23854695-23854742)
chr2 (648-690)||(13284737-13284779)
chr2 (568-620)||(19026480-19026530)
chr2 (650-695)||(26236420-26236465)
chr2 (651-695)||(17850913-17850957)
chr2 (648-695)||(12419046-12419093)
chr2 (648-695)||(12431106-12431153)
chr2 (650-695)||(30959997-30960042)
[»] chr7 (11 HSPs)
chr7 (568-676)||(14630362-14630468)
chr7 (568-636)||(33131701-33131767)
chr7 (568-681)||(14800900-14801013)
chr7 (568-681)||(15247892-15248005)
chr7 (568-689)||(14646893-14647015)
chr7 (648-695)||(20963817-20963864)
chr7 (648-695)||(28218185-28218232)
chr7 (648-695)||(28218487-28218534)
chr7 (648-695)||(41600282-41600329)
chr7 (648-695)||(48672603-48672650)
chr7 (650-695)||(41599965-41600010)
[»] chr5 (7 HSPs)
chr5 (651-695)||(28071825-28071869)
chr5 (648-695)||(14143909-14143956)
chr5 (648-695)||(14411704-14411751)
chr5 (648-695)||(17762290-17762337)
chr5 (648-695)||(23979225-23979272)
chr5 (648-695)||(24074310-24074357)
chr5 (650-695)||(27159280-27159325)
[»] chr1 (12 HSPs)
chr1 (648-692)||(37236728-37236772)
chr1 (568-636)||(26266483-26266549)
chr1 (568-636)||(26271129-26271195)
chr1 (651-695)||(29696572-29696616)
chr1 (648-695)||(17606630-17606677)
chr1 (648-695)||(18342341-18342388)
chr1 (648-695)||(18462293-18462340)
chr1 (648-695)||(33629014-33629061)
chr1 (648-695)||(39826370-39826417)
chr1 (568-637)||(17500836-17500903)
chr1 (650-695)||(27039645-27039690)
chr1 (650-695)||(42510341-42510386)
[»] scaffold0352 (2 HSPs)
scaffold0352 (648-695)||(6003-6050)
scaffold0352 (648-695)||(4674-4721)
[»] chr3 (14 HSPs)
chr3 (648-695)||(27946116-27946163)
chr3 (648-690)||(36990983-36991025)
chr3 (648-690)||(37016423-37016465)
chr3 (648-695)||(5800612-5800659)
chr3 (648-695)||(9266982-9267029)
chr3 (648-695)||(14162194-14162241)
chr3 (648-695)||(14171910-14171957)
chr3 (648-695)||(14262360-14262407)
chr3 (648-695)||(16722315-16722362)
chr3 (648-695)||(30500050-30500097)
chr3 (648-695)||(45970240-45970287)
chr3 (649-695)||(3425973-3426019)
chr3 (654-695)||(20853702-20853743)
chr3 (649-690)||(35740829-35740870)
[»] scaffold0141 (1 HSPs)
scaffold0141 (649-695)||(8332-8378)
[»] chr6 (8 HSPs)
chr6 (648-689)||(15942461-15942502)
chr6 (650-695)||(18500655-18500700)
chr6 (648-695)||(9481189-9481236)
chr6 (648-695)||(18500322-18500369)
chr6 (648-695)||(24731942-24731989)
chr6 (650-689)||(34113591-34113630)
chr6 (648-689)||(15941316-15941357)
chr6 (648-689)||(21069527-21069568)
[»] scaffold0117 (1 HSPs)
scaffold0117 (648-695)||(12306-12353)
[»] scaffold0477 (1 HSPs)
scaffold0477 (650-695)||(4887-4932)


Alignment Details
Target: chr8 (Bit Score: 502; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 21 - 570
Target Start/End: Original strand, 8105180 - 8105729
Alignment:
Q  21 tcttacttagacaatttatgttgtaaatcagaagccccaaactttgattttaaaccctaattttcttcccctccaaaattcagaatataaccttttaaat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8105180 tcttacttagacaatttatgttgtaaatcagaagccccaaactttaattttaaaccctaattttcttcccctccaaaattcagaatataaccttttaaat 8105279  T
Q  121 tcggatccaattttcttcccctcaagtttcaattattacagtctagaatccctaattttgttttccttttcccaatccttactccccaatccatgtgttc 220  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8105280 tcggattcaattttcttcccctcaagtttcaattattacagtccagaatccctaatttcgttttccttttcccaatccttactccccaatccatgtgttc 8105379  T
Q  221 atcttaattctctcatcctcttcatgttcttcatttaatatggaaacccagaaaatcaatgaaacccaaatcaaaacctctttctcaatcttgttgtgtg 320  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8105380 atcttaattctctcatcctcttcgtgttcttcatttaatatggaaacccagaaaatcaatgaaactcaaatcaaaacctctttctcaatcttgttgtgtg 8105479  T
Q  321 tctgtgagtaataaaaatcaaaatcttagtttcctctcaatcaaccccacattcgccactattgtatgaaaaggaaagtggagaagatagttcatgtagg 420  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8105480 tctctgagtaatcaaaatcaaaatcttagtttcctctcaatcaacctcacattcgccactattgtatggaaaggaaagtggagaagatagttcatgtagg 8105579  T
Q  421 tctctcatttatgtggattttgtagcagattcaatgaagttgaatggtgtctttgtaggtccattacttcattttatcaaaactgagtttaagataaaga 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8105580 tctctcatttatgtggattttgtagcagattcaatgaagttgaatggtgtctttgtaggtccattacttcattttatcaaaactgagtttaagatgaaga 8105679  T
Q  521 ttagtggtgattcatttgtactctttctttttcgatttgcttttcgatct 570  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8105680 ttagtggtgattcatttgtactctttctttttcgatttgcttttggatct 8105729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 568 - 695
Target Start/End: Original strand, 8105998 - 8106123
Alignment:
Q  568 tctgctgactagtttaagtgagggatcaatagtgtggaggaatctgaaatgatagggacggaatctaaacnnnnnnnnagagggactaaaaccgaaattc 667  Q
    ||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||        |||||||||||||| | |||||    
T  8105998 tctgccgactagtttaagtgagggatcaatagtg--gaggaatctgaaatgatagggacgaaatctaaacatttttttagagggactaaaactggaattc 8106095  T
Q  668 gctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||  ||||||||||||||    
T  8106096 gctcatattgcaatgaccaaaagaggta 8106123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 568 - 695
Target Start/End: Original strand, 20876991 - 20877116
Alignment:
Q  568 tctgctgactagtttaagtgagggatcaatagtgtggaggaatctgaaatgatagggacggaatctaaacnnnnnnnnagagggactaaaaccgaaattc 667  Q
    ||||||||| |||||||||||||||  || || |  || |||||||||||||||||||  ||||| ||||        | |||||||||||||| |||||    
T  20876991 tctgctgacaagtttaagtgagggactaaaaggg--gaagaatctgaaatgatagggatagaatcaaaacttttttttatagggactaaaaccggaattc 20877088  T
Q  668 gctcatattgcagggaccaaaagaggta 695  Q
    ||||||||| ||||||||||||||||||    
T  20877089 gctcatattacagggaccaaaagaggta 20877116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 650 - 695
Target Start/End: Complemental strand, 20875750 - 20875705
Alignment:
Q  650 ggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||    
T  20875750 ggactaaaaccgaaatttgctcatattacagggaccaaaagaggta 20875705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 35367464 - 35367417
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||||    
T  35367464 agggattaaaaccggaattcgctaatattgcagggaccaaaagaggta 35367417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 568 - 695
Target Start/End: Complemental strand, 39888615 - 39888488
Alignment:
Q  568 tctgctgactagtttaagtgagggatcaatagtgtggaggaatctgaaatgatagggacggaatctaaa--cnnnnnnnnagagggactaaaaccgaaat 665  Q
    ||||||||| ||||||||||||||||||| |  | ||| |||||| ||||||||||||| |||||||||           | |||||||||||||||| |    
T  39888615 tctgctgacaagtttaagtgagggatcaaaa--gcggaagaatctcaaatgatagggacagaatctaaattattatttttacagggactaaaaccgaatt 39888518  T
Q  666 tcgctcatattgcagggaccaaaagaggta 695  Q
    ||||| |||||  |||||||||||||||||    
T  39888517 tcgcttatattatagggaccaaaagaggta 39888488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 652 - 695
Target Start/End: Complemental strand, 1949702 - 1949659
Alignment:
Q  652 actaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||| |||||| ||||||| ||||||||||||||||||    
T  1949702 actaaaaccggaattcgatcatattacagggaccaaaagaggta 1949659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 5554923 - 5554876
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  5554923 agggactaaaaccggaattcgctaatattacagggacgaaaagaggta 5554876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 651 - 694
Target Start/End: Original strand, 5555196 - 5555239
Alignment:
Q  651 gactaaaaccgaaattcgctcatattgcagggaccaaaagaggt 694  Q
    |||||||||||||||||||| ||||| ||||||| |||||||||    
T  5555196 gactaaaaccgaaattcgctaatattacagggacgaaaagaggt 5555239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 10108424 - 10108377
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  10108424 agggactaaaaccggaattcgctaatattacagggacgaaaagaggta 10108377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 14820618 - 14820665
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  14820618 agggactaaaaccggaattcgctaatattacagggactaaaagaggta 14820665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 21147990 - 21147943
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  21147990 agggactaaaaccggaattcgctaatattacagggacaaaaagaggta 21147943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 43851719 - 43851672
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  43851719 agggactaaaaccggaattcgctaatattacagggacgaaaagaggta 43851672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 695
Target Start/End: Complemental strand, 7689576 - 7689531
Alignment:
Q  650 ggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||| |||||||||||| ||||| ||||||| ||||||||||    
T  7689576 ggactaaagccgaaattcgctaatattacagggacgaaaagaggta 7689531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 691
Target Start/End: Complemental strand, 8104714 - 8104677
Alignment:
Q  654 taaaaccgaaattcgctcatattgcagggaccaaaaga 691  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  8104714 taaaactgaaactcgctcatattgcagggaccaaaaga 8104677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 695
Target Start/End: Original strand, 18044153 - 18044198
Alignment:
Q  650 ggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  18044153 ggactaaaaccggaattcgctaatattacagggacgaaaagaggta 18044198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 689
Target Start/End: Complemental strand, 38726741 - 38726700
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaa 689  Q
    |||||||||||||| |||| ||||||||| ||||||||||||    
T  38726741 agggactaaaaccggaatttgctcatattacagggaccaaaa 38726700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 568 - 695
Target Start/End: Complemental strand, 53896579 - 53896453
Alignment:
Q  568 tctgctgactagtttaagtgagggatcaatagtgtggaggaatctgaaatgatagggacggaatctaaac-nnnnnnnnagagggactaaaaccgaaatt 666  Q
    |||||||||||||||| |||||||| ||||||||  ||||||||| |||||||||||| |||||||||||         | |||||||||||||| ||||    
T  53896579 tctgctgactagtttatgtgagggaccaatagtg--gaggaatctaaaatgatagggatggaatctaaactttttttttacagggactaaaaccggaatt 53896482  T
Q  667 cgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||| ||| || |||||||||||    
T  53896481 cgctcatattacagcgatcaaaagaggta 53896453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 51028391 - 51028470
Alignment:
Q  44 taaatcagaagccccaaactttgattttaaaccctaattttcttcccctccaaaattcagaatataaccttttaaattcg 123  Q
    ||||||| || || |||||||||||| |||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  51028391 taaatcaaaaacctcaaactttgattctaaaccctaattttcttccccttcaaaattcataatttaaccatttaaattcg 51028470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 568 - 695
Target Start/End: Complemental strand, 36887814 - 36887687
Alignment:
Q  568 tctgctgactagtttaagtgagggatcaatagtgtggaggaatctgaaatgatagggacggaatctaaacnnnnnnnn--agagggactaaaaccgaaat 665  Q
    ||||||||| ||||||||||||||| ||| ||||  || |||||| |||||||||||| |||||||||||          | ||||||||||||| ||||    
T  36887814 tctgctgacaagtttaagtgagggaccaaaagtg--gaagaatctcaaatgatagggatggaatctaaacttttttttttacagggactaaaaccaaaat 36887717  T
Q  666 tcgctcatattgcagggaccaaaagaggta 695  Q
    ||||| ||||| ||||||||||||||||||    
T  36887716 tcgctaatattacagggaccaaaagaggta 36887687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 648 - 692
Target Start/End: Original strand, 51029097 - 51029141
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagag 692  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  51029097 agggactaaaaccgaaattcgctcatattacagggaccaaaagag 51029141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 31218305 - 31218352
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  31218305 agggactaaaaccggaattcgctaatattacagggacgaaaagaggta 31218352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 649 - 695
Target Start/End: Complemental strand, 3018064 - 3018018
Alignment:
Q  649 gggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  3018064 gggactaaaaccggaattcgctaatattacagggacgaaaagaggta 3018018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 650 - 692
Target Start/End: Original strand, 41947180 - 41947222
Alignment:
Q  650 ggactaaaaccgaaattcgctcatattgcagggaccaaaagag 692  Q
    ||||||||||||||||||||| ||||| ||||||| |||||||    
T  41947180 ggactaaaaccgaaattcgctaatattacagggacgaaaagag 41947222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 637
Target Start/End: Original strand, 43313456 - 43313523
Alignment:
Q  568 tctgctgactagtttaagtgagggatcaatagtgtggaggaatctgaaatgatagggacggaatctaaac 637  Q
    ||||||||| ||||||||||||||| ||| |  ||||| |||||  |||||||||||| |||||||||||    
T  43313456 tctgctgacaagtttaagtgagggaccaaaa--gtggaagaatcacaaatgatagggatggaatctaaac 43313523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 651 - 692
Target Start/End: Original strand, 9516937 - 9516978
Alignment:
Q  651 gactaaaaccgaaattcgctcatattgcagggaccaaaagag 692  Q
    |||||||||||||||||||| ||||| ||||||| |||||||    
T  9516937 gactaaaaccgaaattcgctaatattacagggacgaaaagag 9516978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 21481535 - 21481592
Alignment:
Q  61 actttgattttaaaccctaattttcttcccctccaaaattcagaatataaccttttaa 118  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21481535 actttaattctaaaccctaattttcttcccctccaaaattcagaatataaccttttaa 21481592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 568 - 695
Target Start/End: Complemental strand, 30958817 - 30958691
Alignment:
Q  568 tctgctgactagtttaagtgagggatcaatagtgtggaggaatctgaaatgatagggacggaatctaaacnnnnnnnn-agagggactaaaaccgaaatt 666  Q
    ||||||||| ||||||||||| ||| ||| ||||  || |||||| |||||||||||| | |||||||||         | |||||||||||||||||||    
T  30958817 tctgctgacaagtttaagtgatggaccaaaagtg--gaagaatctcaaatgatagggatgaaatctaaactttttttttacagggactaaaaccgaaatt 30958720  T
Q  667 cgctcatattgcagggaccaaaagaggta 695  Q
    |||| ||||| ||||||||||||| ||||    
T  30958719 cgctaatattacagggaccaaaagtggta 30958691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 19251525 - 19251478
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  19251525 agggactaaaaccgaaattcgctaatattacagggacgaaaagaggta 19251478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 23806276 - 23806323
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  23806276 agggactaaaaccgaaattcgctaatattacagggacaaaaagaggta 23806323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 23854742 - 23854695
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  23854742 agggactaaaaccgaaattcgctaatattacagggacgaaaagaggta 23854695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 648 - 690
Target Start/End: Original strand, 13284737 - 13284779
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaag 690  Q
    ||||||||||||||||||||||| ||||| |||||||||||||    
T  13284737 agggactaaaaccgaaattcgctaatattacagggaccaaaag 13284779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 620
Target Start/End: Complemental strand, 19026530 - 19026480
Alignment:
Q  568 tctgctgactagtttaagtgagggatcaatagtgtggaggaatctgaaatgat 620  Q
    ||||||||| ||||||||||||||| |||||  ||||||||||||||||||||    
T  19026530 tctgctgacaagtttaagtgagggaccaata--gtggaggaatctgaaatgat 19026480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 695
Target Start/End: Original strand, 26236420 - 26236465
Alignment:
Q  650 ggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  26236420 ggactaaaaccgaaattcgctaatattacagggacgaaaagaggta 26236465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 651 - 695
Target Start/End: Original strand, 17850913 - 17850957
Alignment:
Q  651 gactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||||    
T  17850913 gactaaaaccgaaattcgctaatattacagggacgaaaagaggta 17850957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 12419046 - 12419093
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||||||||| ||||    
T  12419046 agggactaaaaccggaattcgctaatattacagggaccaaaagtggta 12419093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 12431106 - 12431153
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||||||||| ||||    
T  12431106 agggactaaaaccggaattcgctaatattacagggaccaaaagtggta 12431153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 695
Target Start/End: Original strand, 30959997 - 30960042
Alignment:
Q  650 ggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||| |||||||| ||||| ||||||||||||| ||||    
T  30959997 ggactaaaaccggaattcgctaatattacagggaccaaaagtggta 30960042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 568 - 676
Target Start/End: Complemental strand, 14630468 - 14630362
Alignment:
Q  568 tctgctgactagtttaagtgagggatcaatagtgtggaggaatctgaaatgatagggacggaatctaaacnnnnnnnnagagggactaaaaccgaaattc 667  Q
    |||| ||||||||| |||||||||| ||||  |||||| ||||||||||||| |||||| |||||||| |        | |||||||||||||| |||||    
T  14630468 tctgttgactagttcaagtgagggaccaat--tgtggaagaatctgaaatgacagggacagaatctaaccttttttttacagggactaaaaccggaattc 14630371  T
Q  668 gctcatatt 676  Q
    |||||||||    
T  14630370 gctcatatt 14630362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 568 - 636
Target Start/End: Complemental strand, 33131767 - 33131701
Alignment:
Q  568 tctgctgactagtttaagtgagggatcaatagtgtggaggaatctgaaatgatagggacggaatctaaa 636  Q
    ||||||||||||||||||||||||| ||| || |  || |||||||||||||||||||| |||||||||    
T  33131767 tctgctgactagtttaagtgagggagcaaaagcg--gaagaatctgaaatgatagggacagaatctaaa 33131701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 681
Target Start/End: Original strand, 14800900 - 14801013
Alignment:
Q  568 tctgctgactagtttaagtgagggatcaatagtgtggaggaatctgaaatgatagggacggaatctaaac--nnnnnnnnagagggactaaaaccgaaat 665  Q
    |||||||||||||| ||||||| || ||||  |||||| ||||||||||||| ||||||  |||||||||          | ||||||||||||||||||    
T  14800900 tctgctgactagttcaagtgagagaccaat--tgtggaagaatctgaaatgacagggacaaaatctaaacttttttttttacagggactaaaaccgaaat 14800997  T
Q  666 tcgctcatattgcagg 681  Q
    ||||||||||| ||||    
T  14800998 tcgctcatattacagg 14801013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 681
Target Start/End: Original strand, 15247892 - 15248005
Alignment:
Q  568 tctgctgactagtttaagtgagggatcaatagtgtggaggaatctgaaatgatagggacggaatctaaac--nnnnnnnnagagggactaaaaccgaaat 665  Q
    |||||||||||||| ||||||| || ||||  |||||| ||||||||||||| ||||||  |||||||||          | ||||||||||||||||||    
T  15247892 tctgctgactagttcaagtgagagaccaat--tgtggaagaatctgaaatgacagggacaaaatctaaacttttttttttacagggactaaaaccgaaat 15247989  T
Q  666 tcgctcatattgcagg 681  Q
    ||||||||||| ||||    
T  15247990 tcgctcatattacagg 15248005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 689
Target Start/End: Original strand, 14646893 - 14647015
Alignment:
Q  568 tctgctgactagtttaagtgagggatcaatagtgtggaggaatctgaaatgatagggacggaatctaaac---nnnnnnnnagagggactaaaaccgaaa 664  Q
    |||||||||||||| |||||||||| | ||  |||||| ||||||||||||| |||||  ||||||||||           | |||||||||||||| ||    
T  14646893 tctgctgactagttcaagtgagggaccgat--tgtggaagaatctgaaatgacagggatagaatctaaactttttttttttacagggactaaaaccggaa 14646990  T
Q  665 ttcgctcatattgcagggaccaaaa 689  Q
    |||||||||||| ||||||| ||||    
T  14646991 ttcgctcatattacagggactaaaa 14647015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 20963817 - 20963864
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  20963817 agggactaaaaccggaattcgctaatattacagggacaaaaagaggta 20963864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 28218232 - 28218185
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  28218232 agggactaaaaccggaattcgctaatattacagggacgaaaagaggta 28218185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 28218487 - 28218534
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  28218487 agggactaaaaccggaattcgctaatattacagggacgaaaagaggta 28218534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 41600282 - 41600329
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  41600282 agggactaaaaccggaattcgctaatattacagggacaaaaagaggta 41600329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 48672603 - 48672650
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||||||||||||| ||||| ||| ||| ||||||||||    
T  48672603 agggactaaaaccgaaattcgctaatattacagagacgaaaagaggta 48672650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 695
Target Start/End: Complemental strand, 41600010 - 41599965
Alignment:
Q  650 ggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||||||||||| ||||| ||||||  ||||||||||    
T  41600010 ggactaaaaccgaaattcgctaatattacagggatgaaaagaggta 41599965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 651 - 695
Target Start/End: Original strand, 28071825 - 28071869
Alignment:
Q  651 gactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||    
T  28071825 gactaaaaccgaaattcgctcatattacagggaccaaaaggggta 28071869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 14143956 - 14143909
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  14143956 agggactaaaaccggaattcgctaatattacagggacgaaaagaggta 14143909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 14411751 - 14411704
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  14411751 agggactaaaaccggaattcgctaatattacagggacgaaaagaggta 14411704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 17762337 - 17762290
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  17762337 agggactaaaaccggaattcgctaatattacagggacaaaaagaggta 17762290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 23979225 - 23979272
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  23979225 agggactaaaaccggaattcgctaatattacagggacgaaaagaggta 23979272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 24074357 - 24074310
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||||||||||||| ||||| || |||| ||||||||||    
T  24074357 agggactaaaaccgaaattcgctaatattacatggacgaaaagaggta 24074310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 695
Target Start/End: Original strand, 27159280 - 27159325
Alignment:
Q  650 ggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||||||||||| ||||| || |||| ||||||||||    
T  27159280 ggactaaaaccgaaattcgctaatattacaaggacgaaaagaggta 27159325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 648 - 692
Target Start/End: Complemental strand, 37236772 - 37236728
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagag 692  Q
    |||||||||||||| |||||||||||||| |||||||||||||||    
T  37236772 agggactaaaaccggaattcgctcatattacagggaccaaaagag 37236728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 636
Target Start/End: Complemental strand, 26266549 - 26266483
Alignment:
Q  568 tctgctgactagtttaagtgagggatcaatagtgtggaggaatctgaaatgatagggacggaatctaaa 636  Q
    ||||||||| |||| |||||||||| ||||  |||||| |||||| ||||||||||||| |||||||||    
T  26266549 tctgctgacaagttcaagtgagggaacaat--tgtggaagaatctcaaatgatagggacagaatctaaa 26266483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 636
Target Start/End: Original strand, 26271129 - 26271195
Alignment:
Q  568 tctgctgactagtttaagtgagggatcaatagtgtggaggaatctgaaatgatagggacggaatctaaa 636  Q
    ||||||||| |||| |||||||||||||||  ||| || |||||| ||||||||||||| |||||||||    
T  26271129 tctgctgacaagttcaagtgagggatcaat--tgtagaagaatctcaaatgatagggacagaatctaaa 26271195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 651 - 695
Target Start/End: Complemental strand, 29696616 - 29696572
Alignment:
Q  651 gactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||||    
T  29696616 gactaaaaccgaaattcgctaatattacagggacgaaaagaggta 29696572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 17606630 - 17606677
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  17606630 agggactaaaaccggaattcgctaatattacagggacgaaaagaggta 17606677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 18342341 - 18342388
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||||||||||||| ||||| ||||||| |||| |||||    
T  18342341 agggactaaaaccgaaattcgctaatattacagggacgaaaaaaggta 18342388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 18462340 - 18462293
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  18462340 agggactaaaaccggaattcgctaatattacagggacgaaaagaggta 18462293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 33629014 - 33629061
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  33629014 agggactaaaaccggaattcgctaatattacagggacaaaaagaggta 33629061  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 39826370 - 39826417
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||||||||||||| ||||| || |||| ||||||||||    
T  39826370 agggactaaaaccgaaattcgctaatattacatggacgaaaagaggta 39826417  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 637
Target Start/End: Complemental strand, 17500903 - 17500836
Alignment:
Q  568 tctgctgactagtttaagtgagggatcaatagtgtggaggaatctgaaatgatagggacggaatctaaac 637  Q
    ||||||||| ||||||||||||||| ||| ||||  ||  ||||| |||||||||||| |||||||||||    
T  17500903 tctgctgacaagtttaagtgagggaccaaaagtg--gaataatctcaaatgatagggatggaatctaaac 17500836  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 695
Target Start/End: Complemental strand, 27039690 - 27039645
Alignment:
Q  650 ggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||| ||||||| |||||||||||||| ||||||| ||||||||||    
T  27039690 ggaccaaaaccggaattcgctcatattacagggacgaaaagaggta 27039645  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 695
Target Start/End: Original strand, 42510341 - 42510386
Alignment:
Q  650 ggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||| |||||||| ||||| ||||||||||||| ||||    
T  42510341 ggactaaaaccggaattcgctaatattacagggaccaaaagtggta 42510386  T

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Target: scaffold0352 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 6003 - 6050
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||||    
T  6003 agggactaaaatcggaattcgctaatattgcagggaccaaaagaggta 6050  T

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Target: scaffold0352; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 4721 - 4674
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||| | |||||||| ||||||||||||| ||||||||||    
T  4721 agggactaaaactggaattcgctaatattgcagggactaaaagaggta 4674  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 27946163 - 27946116
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  27946163 agggactaaaaccgaaattcgctaatattacagggacgaaaagaggta 27946116  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 648 - 690
Target Start/End: Original strand, 36990983 - 36991025
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaag 690  Q
    ||||||||||||||||||||||| ||||| |||||||||||||    
T  36990983 agggactaaaaccgaaattcgctaatattacagggaccaaaag 36991025  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 648 - 690
Target Start/End: Original strand, 37016423 - 37016465
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaag 690  Q
    ||||||||||||||||||||||| ||||| |||||||||||||    
T  37016423 agggactaaaaccgaaattcgctaatattacagggaccaaaag 37016465  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 5800659 - 5800612
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||||||||||| | ||||| ||||||| ||||||||||    
T  5800659 agggactaaaaccgaaattcgttaatattacagggacgaaaagaggta 5800612  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 9267029 - 9266982
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  9267029 agggactaaaaccggaattcgctaatattacagggacgaaaagaggta 9266982  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 14162194 - 14162241
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  14162194 agggactaaaaccggaattcgctaatattacagggacaaaaagaggta 14162241  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 14171910 - 14171957
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  14171910 agggactaaaaccggaattcgctaatattacagggacgaaaagaggta 14171957  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 14262360 - 14262407
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  14262360 agggactaaaaccggaattcgctaatattacagggacgaaaagaggta 14262407  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 16722315 - 16722362
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||| |||||||||| ||||| ||||||| ||||||||||    
T  16722315 agggactaaaactgaaattcgctaatattacagggacgaaaagaggta 16722362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 30500097 - 30500050
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||||||||||||| ||||| ||||||  ||||||||||    
T  30500097 agggactaaaaccgaaattcgctaatattacagggatgaaaagaggta 30500050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 45970240 - 45970287
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||||||||| || ||||| ||||||| ||||||||||    
T  45970240 agggactaaaaccgaaattcactaatattacagggacgaaaagaggta 45970287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 649 - 695
Target Start/End: Original strand, 3425973 - 3426019
Alignment:
Q  649 gggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||| |||||||| ||||| ||||| ||||||||||||    
T  3425973 gggactaaaaccggaattcgctaatattacaggggccaaaagaggta 3426019  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 695
Target Start/End: Complemental strand, 20853743 - 20853702
Alignment:
Q  654 taaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||||||| ||||| ||||||| ||||||||||    
T  20853743 taaaaccgaaattcgctaatattacagggacgaaaagaggta 20853702  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 690
Target Start/End: Complemental strand, 35740870 - 35740829
Alignment:
Q  649 gggactaaaaccgaaattcgctcatattgcagggaccaaaag 690  Q
    ||||||||||||| |||||||| ||||| |||||||||||||    
T  35740870 gggactaaaaccggaattcgctaatattacagggaccaaaag 35740829  T

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Target: scaffold0141 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 649 - 695
Target Start/End: Complemental strand, 8378 - 8332
Alignment:
Q  649 gggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  8378 gggactaaaaccgaaattcgctaatattacagggacgaaaagaggta 8332  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 648 - 689
Target Start/End: Original strand, 15942461 - 15942502
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaa 689  Q
    ||||||||||| || |||||||||||||||||||||||||||    
T  15942461 agggactaaaatcggaattcgctcatattgcagggaccaaaa 15942502  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 695
Target Start/End: Original strand, 18500655 - 18500700
Alignment:
Q  650 ggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  18500655 ggactaaaaccgaaattcgctaatattacagggacgaaaagaggta 18500700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 9481236 - 9481189
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  9481236 agggactaaaaccggaattcgctaatattacagggacgaaaagaggta 9481189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 18500369 - 18500322
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||||||||||||| |||||  |||||| ||||||||||    
T  18500369 agggactaaaaccgaaattcgctaatattatagggacgaaaagaggta 18500322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 24731989 - 24731942
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  24731989 agggactaaaaccggaattcgctaatattacagggacgaaaagaggta 24731942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 650 - 689
Target Start/End: Original strand, 34113591 - 34113630
Alignment:
Q  650 ggactaaaaccgaaattcgctcatattgcagggaccaaaa 689  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  34113591 ggactaaaaccgaaattcgctaatattacagggaccaaaa 34113630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 689
Target Start/End: Complemental strand, 15941357 - 15941316
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaa 689  Q
    |||||||||||||| |||||| ||||||| ||||||||||||    
T  15941357 agggactaaaaccggaattcgatcatatttcagggaccaaaa 15941316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 689
Target Start/End: Complemental strand, 21069568 - 21069527
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaa 689  Q
    |||||||||||||| |||||||||||||| ||||||| ||||    
T  21069568 agggactaaaaccggaattcgctcatattacagggactaaaa 21069527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 12306 - 12353
Alignment:
Q  648 agggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||    
T  12306 agggactaaaaccggaattcgctaatattacagggacgaaaagaggta 12353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 695
Target Start/End: Complemental strand, 4932 - 4887
Alignment:
Q  650 ggactaaaaccgaaattcgctcatattgcagggaccaaaagaggta 695  Q
    ||||||||||||||||||||| ||||| |||| || ||||||||||    
T  4932 ggactaaaaccgaaattcgctaatattacaggaacaaaaagaggta 4887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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