View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18260_low_2 (Length: 645)
Name: NF18260_low_2
Description: NF18260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18260_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 567; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 19 - 640
Target Start/End: Original strand, 22782922 - 22783545
Alignment:
| Q |
19 |
aaactagataatgtattaaggaacttaatcaagatcaactactatttaggcccaaacttagaaaaaggacacaagaggtattgtaaagattagtatggga |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22782922 |
aaactagataatgtatta-ggaacttaatcaagatcaactactatttaggcccaaacttagaaaaaggacacaagaggtattgtaaagattagtatggga |
22783020 |
T |
|
| Q |
119 |
aaaattgtaatttgatcaaagtaacttaccattttccccatactattattgaagattaatatgggtgaaaattgatttgtatgtttgattttaatcattg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22783021 |
aaaattgtaatttgatcaaagtaacttaccattttccccatactattattgaagattaatatgggtgaaaattgatttgtatgtttgattttaatcattg |
22783120 |
T |
|
| Q |
219 |
aaaatttgattaaagtatttcaaattatgtgtcaattgaatcatcttccacatttgataaattttcactttttcaagatgagggtgttacattgagagat |
318 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
22783121 |
aagatttgattaaagtatttcaaattatgtgtcaattgaatcatcttccacatttgataaattttcactttttcaagatgagggtgttacattgagggat |
22783220 |
T |
|
| Q |
319 |
aagataaaaatgaatatacctctataacatctccgatattgacgactatggcatc---taatattggattaattggtacccaatttcctttgtttcgaat |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22783221 |
aagataaaaatgaatatacctctataacatctccgatattgacgactatggcatctaataatattggattaattggtacccaatttcctttgtttcgaat |
22783320 |
T |
|
| Q |
416 |
ttctaacccagacacatcatcatcttgcatgagcaaggtaatggtgcctgtgtcagaatgcgaactcatacctagtacttgctcaggtgtgttgcaagga |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22783321 |
ttctaacccagacacatcatcatcttgcatgagcaaggtaatggtgcctgtgtcagaatgcgaactcatacctaatacttgctcaggtgtgttgcaagga |
22783420 |
T |
|
| Q |
516 |
gggtaatagttcacacgtaatgcttgaatgaattctttatgcaatccaacaagagcatgcttctctaaccccatgataatagacagaaaacttagaattt |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| || || |
|
|
| T |
22783421 |
gggtaatagttcacacgtaatgcttgaatgaattctttatgcaatccaacaagagcatgcttctctaaccccataataatagacaaagaacttaaaagtt |
22783520 |
T |
|
| Q |
616 |
cctcgccaactcgtttcatctcact |
640 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
22783521 |
cctcgccaactcgtttcatttcact |
22783545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 335 - 629
Target Start/End: Original strand, 22778793 - 22779087
Alignment:
| Q |
335 |
tacctctataacatctccgatattgacgactatggcatctaatattggattaattggtacccaatttcctttgtttcgaatttctaacccagacacatca |
434 |
Q |
| |
|
|||||||||||||||||| | ||||| |||| |||||| ||||||| |||| |||||||||||||||||||||| |||||||| ||| ||||||| |
|
|
| T |
22778793 |
tacctctataacatctccaacattgataactagagcatctgatattggtttaaccggtacccaatttcctttgtttctgatttctaatccaagcacatca |
22778892 |
T |
|
| Q |
435 |
tcatcttgcatgagcaaggtaatggtgcctgtgtcagaatgcgaactcatacctagtacttgctcaggtgtgttgcaaggagggtaatagttcacacgta |
534 |
Q |
| |
|
|||||||| || || |||||||||||| ||||||||| || | ||||| ||| | |||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
22778893 |
tcatcttgaataagtaaggtaatggtggttgtgtcagagtgtggactcaaacccaatacttgctcagggttgttgcaaggagggtaatagttcacgcgta |
22778992 |
T |
|
| Q |
535 |
atgcttgaatgaattctttatgcaatccaacaagagcatgcttctctaaccccatgataatagacagaaaacttagaatttcctcgccaactcgt |
629 |
Q |
| |
|
| ||||||| ||||||||||||| | || | |||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22778993 |
aaccttgaattaattctttatgcagttcagcgagagcatgtttctccaaccccatgataatagacagaaaacttagaagttcctcgccaactcgt |
22779087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 335 - 633
Target Start/End: Original strand, 22766121 - 22766419
Alignment:
| Q |
335 |
tacctctataacatctccgatattgacgactatggcatctaatattggattaattggtacccaatttcctttgtttcgaatttctaacccagacacatca |
434 |
Q |
| |
|
|||||||||||||||||| | |||||| || | |||||| |||||||| ||| ||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22766121 |
tacctctataacatctccaacattgacaacaagagcatctgatattggaataactggaacccaatttcctttgtttcgaatttctaacccaggcacatca |
22766220 |
T |
|
| Q |
435 |
tcatcttgcatgagcaaggtaatggtgcctgtgtcagaatgcgaactcatacctagtacttgctcaggtgtgttgcaaggagggtaatagttcacacgta |
534 |
Q |
| |
|
||||||||||| || | ||||||||||||||||||||| || || |||| ||| | |||||| |||||||||||||| | |||||||||||| |||||| |
|
|
| T |
22766221 |
tcatcttgcataagaatggtaatggtgcctgtgtcagagtgtgagctcaaacccaatacttgatcaggtgtgttgcatgtagggtaatagtttacacgtg |
22766320 |
T |
|
| Q |
535 |
atgcttgaatgaattctttatgcaatccaacaagagcatgcttctctaaccccatgataatagacagaaaacttagaatttcctcgccaactcgtttca |
633 |
Q |
| |
|
| ||||| ||||||||||||| |||| ||||||||| ||||| |||||||| |||| ||||| | ||||||||| |||||| ||||||||||||| |
|
|
| T |
22766321 |
aacattgaagtaattctttatgcatcccaaaaagagcatgtttctccaaccccataataagagacaaagaacttagaagttcctcaccaactcgtttca |
22766419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 335 - 627
Target Start/End: Original strand, 22775638 - 22775930
Alignment:
| Q |
335 |
tacctctataacatctccgatattgacgactatggcatctaatattggattaattggtacccaatttcctttgtttcgaatttctaacccagacacatca |
434 |
Q |
| |
|
||||||||| |||||||||| |||||| |||| |||||| |||||||| ||| ||||||||||||||||| | |||||||||||| |||| ||||||| |
|
|
| T |
22775638 |
tacctctattacatctccgacattgacaactagagcatctgatattggagtaacgggtacccaatttcctttatgtcgaatttctaatccaggcacatca |
22775737 |
T |
|
| Q |
435 |
tcatcttgcatgagcaaggtaatggtgcctgtgtcagaatgcgaactcatacctagtacttgctcaggtgtgttgcaaggagggtaatagttcacacgta |
534 |
Q |
| |
|
||||||||||| || || |||||||||| || ||| || || | ||||| ||| | |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22775738 |
tcatcttgcataagtaaagtaatggtgcttgagtcggagtgtggactcaaacccaacacttgctcaggtgtgtcgcaaggagggtaatagttcacacgta |
22775837 |
T |
|
| Q |
535 |
atgcttgaatgaattctttatgcaatccaacaagagcatgcttctctaaccccatgataatagacagaaaacttagaatttcctcgccaactc |
627 |
Q |
| |
|
| | |||| | ||||||||||| |||| ||||| |||| || || |||||||| |||| ||||| | ||||||||| ||| || ||||||| |
|
|
| T |
22775838 |
aaccctgaagtacttctttatgcagtccagcaagaacatgtttttccaaccccataataacagacaaagaacttagaagttcgtcaccaactc |
22775930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 390 - 643
Target Start/End: Complemental strand, 16084194 - 16083941
Alignment:
| Q |
390 |
ggtacccaatttcctttgtttcgaatttctaacccagacacatcatcatcttgcatgagcaaggtaatggtgcctgtgtcagaatgcgaactcataccta |
489 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||| || |||||||||||| || |||| | || | |||| ||||| |
|
|
| T |
16084194 |
ggtacccaatttcctttgtgtcgaatttctaacccaggaacatcatcatcttgcaaaagtaaggtaatggtggttgagtcacagtgtggtctcaaaccta |
16084095 |
T |
|
| Q |
490 |
gtacttgctcaggtgtgttgcaaggagggtaatagttcacacgtaatgcttgaatgaattctttatgcaatccaacaagagcatgcttctctaaccccat |
589 |
Q |
| |
|
||||| |||||| || |||||||||||||||||||||||||||| |||||| | ||||||||| | | ||||||||||||||||||| || ||||| |
|
|
| T |
16084094 |
atactttctcaggcatgctgcaaggagggtaatagttcacacgtaaaccttgaagtacttctttatgtagttcaacaagagcatgcttctccaaacccat |
16083995 |
T |
|
| Q |
590 |
gataatagacagaaaacttagaatttcctcgccaactcgtttcatctcactcga |
643 |
Q |
| |
|
|| | ||||| | ||||||||| ||| | ||||||||||||| |||||||| |
|
|
| T |
16083994 |
aattacagacaaagaacttagaagttcataaccaactcgtttcacttcactcga |
16083941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 333 - 569
Target Start/End: Complemental strand, 23278184 - 23277948
Alignment:
| Q |
333 |
tatacctctataacatctccgatattgacgactatggcatctaatattggattaattggtacccaatttcctttgtttcgaatttctaacccagacacat |
432 |
Q |
| |
|
||||||||||| |||||||| | |||||| |||| |||| | |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
23278184 |
tatacctctattacatctccaagattgaccactaaagcatttggtattggattaattggtacccaatttcctttgtatcgaacttctaacccagttacat |
23278085 |
T |
|
| Q |
433 |
catcatcttgcatgagcaaggtaatggtgcctgtgtcagaatgcgaactcatacctagtacttgctcaggtgtgttgcaaggagggtaatagttcacacg |
532 |
Q |
| |
|
|||| |||||||| | | |||| |||| || ||||| || | | ||| || | ||||||||| |||||||| |||||||| |||||||||||||| |
|
|
| T |
23278084 |
catcgtcttgcataactattgtaactgtgcttgcatcagagtgtggagtcaacccaattacttgctctggtgtgttacaaggaggataatagttcacacg |
23277985 |
T |
|
| Q |
533 |
taatgcttgaatgaattctttatgcaatccaacaaga |
569 |
Q |
| |
|
||| |||||| | ||||||||| | ||||| |||| |
|
|
| T |
23277984 |
taaaccttgaagtacttctttatgtagtccaagaaga |
23277948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 335 - 532
Target Start/End: Original strand, 22770506 - 22770703
Alignment:
| Q |
335 |
tacctctataacatctccgatattgacgactatggcatctaatattggattaattggtacccaatttcctttgtttcgaatttctaacccagacacatca |
434 |
Q |
| |
|
||||||||| |||||||| | ||| || |||| ||| || ||||||| |||||||||||||||||| ||||| |||||||||| ||| || |||||| |
|
|
| T |
22770506 |
tacctctattacatctccaacattaaccactaaagcacctggtattggagtaattggtacccaatttcttttgtatcgaatttctgtccctgatacatca |
22770605 |
T |
|
| Q |
435 |
tcatcttgcatgagcaaggtaatggtgcctgtgtcagaatgcgaactcatacctagtacttgctcaggtgtgttgcaaggagggtaatagttcacacg |
532 |
Q |
| |
|
|| |||||||| | | | |||||| | || ||||| |||| ||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
22770606 |
tcgtcttgcataactattgcaatggtccttggatcagagtgcggactcacacctagtactttctcgggtgtgttacaaggagggtaatagttcacacg |
22770703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University