View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18260_low_5 (Length: 360)
Name: NF18260_low_5
Description: NF18260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18260_low_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 10 - 360
Target Start/End: Complemental strand, 4364918 - 4364568
Alignment:
| Q |
10 |
gtcgaagaaaatggtccaatgaagtataattgggaagcttatgctgagcttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtctt |
109 |
Q |
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| T |
4364918 |
gtcgaaaaagatggtccaatgaagtataattgggaagcttatgctgaacttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtctt |
4364819 |
T |
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| Q |
110 |
ttcatcaatgtggtggaaatgttggtgactcttgcaggtctgcaaatatctatcactcttgttaaacaaaatattgaactagacc--aaatataaaaaat |
207 |
Q |
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| T |
4364818 |
ttcatcaatgtggtggaaatgttggtgactcttgcaggtatggaaatatctatcactcttgttaaacaaaatattcaactagaccaaaaataaaaaaaat |
4364719 |
T |
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| Q |
208 |
caaagactaataatttgtttgtattgcattttatagcattcctctaccaccatgggtactagaagaaatcaggaagaaccctgagttggtttacacagac |
307 |
Q |
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| T |
4364718 |
caaagactaat--ttggtttgtattgcattttatagcattcctctaccaccatgggtgctagaagaaatcaggaagaaccctgagttggtttacacagac |
4364621 |
T |
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| Q |
308 |
aaattaggaagaagaaatccagaatacatctcattgggatgtgattcagtgcc |
360 |
Q |
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| T |
4364620 |
aaattaggaagaagaaatccagaatacatctcattgggatgtgattcagtgcc |
4364568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 10 - 360
Target Start/End: Complemental strand, 4372511 - 4372160
Alignment:
| Q |
10 |
gtcgaagaaaatggtccaatgaagtataattgggaagcttatgctgagcttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtctt |
109 |
Q |
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| T |
4372511 |
gtcgaaaaagatggtccaatgaagtataattgggaagcttatgctgaacttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtctt |
4372412 |
T |
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| Q |
110 |
ttcatcaatgtggtggaaatgttggtgactcttgcaggtctgcaaatatctatcactcttgttaaacaaaatattgaactagaccaaatat---aaaaaa |
206 |
Q |
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| T |
4372411 |
ttcatcaatgtggtggaaatgttggtgactcttgcaggtatggaaatatctatcactcttgttaaacaaaatattcaactagaccaaaaataaaaaaaaa |
4372312 |
T |
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| Q |
207 |
tcaaagactaataatttgtttgtattgcattttatagcattcctctaccaccatgggtactagaagaaatcaggaagaaccctgagttggtttacacaga |
306 |
Q |
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| T |
4372311 |
tcaaagactaat--ttggtttgtattgcattttatagcattcctctaccaccatgggtgctagaagaaatcaggaagaaccctgagttggtttacacaga |
4372214 |
T |
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| Q |
307 |
caaattaggaagaagaaatccagaatacatctcattgggatgtgattcagtgcc |
360 |
Q |
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| T |
4372213 |
caaattaggaagaagaaatccagaatacatctcattgggatgtgattcagtgcc |
4372160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 41042653 - 41042770
Alignment:
| Q |
31 |
aagtataattgggaagcttatgctgagcttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtcttttcatcaatgtggtggaaatg |
130 |
Q |
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| T |
41042653 |
aagtataactgggaagcttatgctgagcttgtgcagatggtgcaattgcatggtttgaagcttcaagttgttatgtcttttcatcagtgtggaggaaatg |
41042752 |
T |
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| Q |
131 |
ttggtgactcttgcaggt |
148 |
Q |
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| T |
41042753 |
ttggagattcctgcaggt |
41042770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 246 - 360
Target Start/End: Original strand, 41042872 - 41042986
Alignment:
| Q |
246 |
ttcctctaccaccatgggtactagaagaaatcaggaagaaccctgagttggtttacacagacaaattaggaagaagaaatccagaatacatctcattggg |
345 |
Q |
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| T |
41042872 |
ttcctctacctccatgggtgatggaagagatcagcaagaaccctgacattgtttacacagacagatcagggaggagaaatcctgagtacatatcattggg |
41042971 |
T |
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| Q |
346 |
atgtgattcagtgcc |
360 |
Q |
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| T |
41042972 |
atgtgattcagtgcc |
41042986 |
T |
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Back To:
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