View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18261_high_12 (Length: 387)
Name: NF18261_high_12
Description: NF18261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18261_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 12086200 - 12086504
Alignment:
| Q |
1 |
acatttgatagcttttcatttcttctagtaatagtgtatatcttttccatatgttgtatttcacttgaatgtgaaaactcttcattagattgaatatcta |
100 |
Q |
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| T |
12086200 |
acatttgaaagcttttcatttcttctagtaatagtgtatatcttttccatatgttgtatttcacttgaatgtgaaaactcttcattagattgaatatcta |
12086299 |
T |
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| Q |
101 |
attgtataaatggagcaatattgctagttttgaaccacttttcagatgaagagtgttcaaaggattcaaaattgaaatctgagattgctgaattatccaa |
200 |
Q |
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| T |
12086300 |
attgtataaatggagcaatattgcttgtttttaaccacttttcagatgaagagtgatcaaaggattcaaagttcaaatcaaagattgctgaattatccaa |
12086399 |
T |
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| Q |
201 |
tggtgaaagatctataacctccttagacatatttgtgaccaaatttttggttctggtttcatcactatctgataaagatt-caaaacattactactatta |
299 |
Q |
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| T |
12086400 |
tggtgaaagttctataacctctttagacatatctgtgaccaaatttttggttttggtttcatcactatctgataaagattccaaaaaactactactatta |
12086499 |
T |
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| Q |
300 |
gtttc |
304 |
Q |
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||||| |
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| T |
12086500 |
gtttc |
12086504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 12086544 - 12086580
Alignment:
| Q |
344 |
tattttgtgataggtttttgtgtgttcacctttgctt |
380 |
Q |
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| T |
12086544 |
tatttagtgataggtttttgtgtgttcacctttgctt |
12086580 |
T |
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