View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18261_high_14 (Length: 378)
Name: NF18261_high_14
Description: NF18261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18261_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 44958075 - 44957720
Alignment:
| Q |
18 |
catgcaggcattgaatatggcagccaaaaacaaattggacaaatcctcttgaccaactttgtttttcttgcaagtatgggtaagcaacatgttcatactc |
117 |
Q |
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| T |
44958075 |
catgcaggcattgaatatggcagccaaaaacaaattggacaaatcctcttgaccacctttgtttttcttgcaagtatgggtaagcaacatgttcatactc |
44957976 |
T |
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| Q |
118 |
tttcaaagtcacataaaaaaccacaaacgcaattatcttaggtttttctggataggacgatattcatctttacagaatcatctaaatgagagtattggaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44957975 |
tttcaaagtcacataaaaaaccacaaacgcaattatcttaggtttttctggataggacgatattcatctttacagaattatctaaatgagagtattggaa |
44957876 |
T |
|
| Q |
218 |
attccagggggtcttatacataataatcgatgatcacattgtggattaaaaacaattacataactaactcatacaaaatgtgtatctaaaatcttaaaga |
317 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44957875 |
attccagggggtcttatacataataattgatgatcacattgtggattaaaaacaattacataactaactcatacaaaatatgtatctaaaatcttaaaga |
44957776 |
T |
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| Q |
318 |
cattatatgtacgcatcttcttcttattaaggggtcccttgcgtgattcatctcac |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44957775 |
cattatatgtacgcatcttcttcttattaaggggtcccttgcgtgattcatatcac |
44957720 |
T |
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