View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18261_high_6 (Length: 498)
Name: NF18261_high_6
Description: NF18261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18261_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 3489480 - 3489970
Alignment:
| Q |
1 |
gcatttattgtttcacgtgtatcatttgaattcaaatttgaatttgtttaaattaatgtacatgaatcagatgagaaaccaagtaattctgatgttgaat |
100 |
Q |
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| T |
3489480 |
gcatttattgtttcacgtgtatcatttgaattcaaattcgaatttgtttaaattaatgtacatgaatcagatgagaaaccaagtaattctgatgttgaat |
3489579 |
T |
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| Q |
101 |
ttcttatacattaaattctgtacattatttccatttattgataattaagccaatttttaaattagagatcataaaataaaaaattttgttttacaactta |
200 |
Q |
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| T |
3489580 |
ttcttatacattaaattctgtacattatttccatttattgataattaagccaatttttaaattagagatcataaaatcaaaaattttgttttacaactta |
3489679 |
T |
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| Q |
201 |
tatgaagagtgcttaataaattttcatttcatatcaccttataacaatttagatattaaataattactctc-tttaggttttcttgtgctgaaattttga |
299 |
Q |
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| T |
3489680 |
tatgaagagtgtttaataaattttcatttcatatcaccttataacaatttagatattaaataattactctcttttaggttttcttgtgctgaaattttga |
3489779 |
T |
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| Q |
300 |
ataggccttggtattgcatttttctgttattaaccattttctgttatcaaatggcagtggaatgtgttgatgtaccagtgatttctggactaactatgtc |
399 |
Q |
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| T |
3489780 |
ataggccttggtattgcatttttctgttattaaccattttctgttatcaaatggcagagaaatgtgttgatgtaccagtgatttctggactaactatgtc |
3489879 |
T |
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| Q |
400 |
gacacatgttggtgtattaagaagaagacacacttctggaaaaactagtcctggaaataatgaagaaaaacttgttcctcatattcttcga |
490 |
Q |
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| T |
3489880 |
gacacgtgttggtgtattaagaagaagacacacttctggaaaaactagtcctggaaataatgaagaaaaacttgttcctcattatcttcga |
3489970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 3509568 - 3509623
Alignment:
| Q |
203 |
tgaagagtgcttaataaattttcatttcatatcaccttataacaatttagatattaa |
259 |
Q |
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| T |
3509568 |
tgaagagtagttgataaattttcatttcatatcaccttataa-aatgtagatattaa |
3509623 |
T |
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