View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18261_high_7 (Length: 482)
Name: NF18261_high_7
Description: NF18261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18261_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 12 - 328
Target Start/End: Original strand, 37066973 - 37067289
Alignment:
| Q |
12 |
agatgaagaatatgaacccatgaaacaattttttggagatgaaagacctaataattattggtggttcgttaaaggaaccgagggttggaccggtgtggtc |
111 |
Q |
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| T |
37066973 |
agatgaagaatatgaacccatgaaacaattttttggagatgaaagacctaataattattggtggttcgttaaaggaaccgagggttggaccggtgtggtc |
37067072 |
T |
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| Q |
112 |
atggttgtgcttatggctgtagctttcattttagcccaaccatggtttcgtcgtaataggctaaaccttccaaaacccctcaagaaactcactggtttta |
211 |
Q |
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| T |
37067073 |
atggttgtgcttatggctatagctttcattttagcacaaccttggtttcgtcgtaataggctaaaccttccaaaacccctcaagaaactcactggtttca |
37067172 |
T |
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| Q |
212 |
atgcattttggtattcacatcacctttttgtcgttgtttacgtgcttttcatcattcatggatacttcctttaccttagcaagaaatggtataagaaaac |
311 |
Q |
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| T |
37067173 |
atgcattttggtattcacatcacctttttgtcattgtttacgtgctatttatcattcatggatacttcctttaccttagcaagaaatggtataagaaaac |
37067272 |
T |
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| Q |
312 |
ggtacgtgttcttactc |
328 |
Q |
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| T |
37067273 |
ggtacgtgctcttactc |
37067289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 402 - 482
Target Start/End: Original strand, 37067360 - 37067440
Alignment:
| Q |
402 |
acaaaattatgtgacatatatagacatggatgtatcttgcggttccaatgatactatacggatgcgaaagactacttcgtg |
482 |
Q |
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| T |
37067360 |
acaaaattatgtgacatatatagacatggatgtatcttgcggttccaatgatactatacggatgcgaaagactacttcgtg |
37067440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 46561932 - 46561636
Alignment:
| Q |
19 |
gaatatgaacccatgaaacaattttttggagatgaaagacctaataattattggtggttcgttaaaggaaccgagggttggaccggtgtggtcatggttg |
118 |
Q |
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||||||| |||||||| |||||||||| ||| | || || || |||||||||||||| || ||||| || ||||||||||| || | |||||||| | |
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| T |
46561932 |
gaatatgttcccatgaagaaattttttggtgatcataggcccaacaattattggtggtttgtaaaaggtacagagggttggactgggatagtcatggtag |
46561833 |
T |
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| Q |
119 |
tgcttatggctgtagctttcattttagcccaaccatggtttcgtcgtaataggctaaaccttccaaaacccctcaagaaactcactggttttaatgcatt |
218 |
Q |
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| T |
46561832 |
tgcttatggctatagcttttactttggcccaaccttggttccgaagaaacaagcttaagctccctccacttttgaagaagctcactggtttcaatgcttt |
46561733 |
T |
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| Q |
219 |
ttggtattcacatcacctttttgtcgttgtttacgtgcttttcatcattcatggatacttcctttaccttagcaagaaatggtataagaaaacggta |
315 |
Q |
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| T |
46561732 |
ttggtattcacatcacctctttgtcattgtttatgctcttcttattgtccatggatacttcttatacctctccaagaaatggtacaagaaaacggta |
46561636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 39983097 - 39983149
Alignment:
| Q |
184 |
aaacccctcaagaaactcactggttttaatgcattttggtattcacatcacct |
236 |
Q |
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| T |
39983097 |
aaacccttcaacaaactcacaggtttcaatgccttttggtattctcatcacct |
39983149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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