View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18261_high_8 (Length: 410)
Name: NF18261_high_8
Description: NF18261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18261_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 10 - 395
Target Start/End: Original strand, 36470418 - 36470803
Alignment:
| Q |
10 |
aagaaaataggtggcttgcaagccaaaagcgctattggcctattgctgatgatgaatcttcaacacatgttgtgcaaccgctatttctgatggcagctcg |
109 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36470418 |
aagataataggtggcttgcaagccaaaagcgctattggcctattgctgatgatgaatcttcaacacatgttgtgcaaccgctattgctgatggcagctcg |
36470517 |
T |
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| Q |
110 |
ctggccaaaagtgtcgcgttgtacccaaccactgctagtcgctaccatactcctatagcgcgctattgacaacatagcttcaaacaacaacaacaggaga |
209 |
Q |
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| T |
36470518 |
ctggccaaaagtgtcgcgttgtacccaaccactgctagtcgctaccatactcctatagcgcgttattgacaacatagcttcaaacaacaacaacaggaga |
36470617 |
T |
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| Q |
210 |
aattcatggattcattatgatcatgatgaaaatgtgtccgaacctcgcatctttaaaaatgattggtagactaataaaccaaaagaaagaacatttgtat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36470618 |
aattcatggattcattatgatcatgatgaaaatgtgtccgaacctcgcatctttaaaaatgattggtagactaataaaccaaaagaaagaacatttgtat |
36470717 |
T |
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| Q |
310 |
attccatcaaagtccacacatcagagagcttgaatcaatgatgcagagtcaatatatatgcctttgcatcatcacttcaaccattt |
395 |
Q |
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| T |
36470718 |
attccatcaaagtccacacatcagagagcttgaatcaatgatgcagagtcaatatatatgcctttgcatcatcacttcaaccattt |
36470803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 49 - 394
Target Start/End: Complemental strand, 21188412 - 21188071
Alignment:
| Q |
49 |
ctattgctgatgatgaatcttcaacacatgttgtgcaaccgctatttctgatggcagctcgctggccaaaagtgtcgcgttgtacccaaccactgctagt |
148 |
Q |
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| T |
21188412 |
ctattgctgatgatgaatcttcaacacatgttgtgcaaccgcgattgctgatggcggctcgctggccaaaagtgtcgcgttgtacccaaccactgctagt |
21188313 |
T |
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| Q |
149 |
cgctaccatactcctatagcgcgctattgacaacatagcttcaaacaacaacaacaggagaaattcatggattcattatgatcatgatgaaaatgtgtcc |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
21188312 |
cgctaccatactcctatagcgcgctattgacaacatagcttcaaacaacaacaa---gagaaattcatggtttcattatgatcatgacgaaaatgtgtcc |
21188216 |
T |
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| Q |
249 |
gaacctcgcatctttaaaaatgattggtagactaataaaccaaaagaaagaacatttgtatattccatcaaagtccacacatcagagagcttgaatcaat |
348 |
Q |
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| T |
21188215 |
gaacctcacat-tttaaaaatgattggtagactaataaaccaaaagaaagaccatttgtatattccatcaaagtccacacatcagagagcttgaatcaat |
21188117 |
T |
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| Q |
349 |
gatgcagagtcaatatatatgcctttgcatcatcacttcaaccatt |
394 |
Q |
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| T |
21188116 |
gatgcagagtcaatatatatgcctttggatcatcagttcaaccatt |
21188071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 161 - 394
Target Start/End: Complemental strand, 29390267 - 29390035
Alignment:
| Q |
161 |
cctatagcgcgctattgacaacatagcttcaaacaacaacaacaggagaaattcatggattcattatgatcatgatgaaaatgtgtccgaacctcgcatc |
260 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||| ||||||| ||| |
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| T |
29390267 |
cctatagcgcccaattgacaacatagcttcaaacaacaacaacaagagaaattcatggtttcattatgatcatgacgaaaatgtgtctgaacctcacat- |
29390169 |
T |
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| Q |
261 |
tttaaaaatgattggtagactaataaaccaaaagaaagaacatttgtatattccatcaaagtccacacatcagagagcttgaatcaatgatgcagagtca |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29390168 |
tttaaaaatgattggtagactaataaaccaaaagaaagaccatttgtatattccattaaagtccacacatcagagagcttgaatcaatgatgcagagtca |
29390069 |
T |
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| Q |
361 |
atatatatgcctttgcatcatcacttcaaccatt |
394 |
Q |
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||||||| ||||||||||||||| |||||||||| |
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| T |
29390068 |
atatatacgcctttgcatcatcagttcaaccatt |
29390035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 299 - 395
Target Start/End: Original strand, 32132641 - 32132733
Alignment:
| Q |
299 |
aacatttgtatattccatcaaagtccacacatcagagagcttgaatcaatgatgcagagtcaatatatatgcctttgcatcatcacttcaaccattt |
395 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
32132641 |
aacatttgtatattccatcaaagtccttgcattagagagcttgaatcaatgatgcagagtca----ctatgcctttgcatcatccactcaaccattt |
32132733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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