View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18261_low_10 (Length: 393)
Name: NF18261_low_10
Description: NF18261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18261_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 388
Target Start/End: Original strand, 9166799 - 9167177
Alignment:
| Q |
19 |
ccaagagccaaggcctgttcttgtacttctcctatgtaatgcaacaacaaatcacacatgaacaaaaaagaaaagaatcgacctattacaacccacatgc |
118 |
Q |
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| T |
9166799 |
ccaagaaccaaggcctgttcttgtacttctcctatgtaatgcaacaacaaatcacacatgaacaaaaaagaaaagaatcgacctattacaacccacatgc |
9166898 |
T |
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| Q |
119 |
aaatattcactttgttcatgacaaatgttatcatcttttcatgtccacagcaatcatcaactaaacaactcagtattttgacctaaccttaccaagacac |
218 |
Q |
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| T |
9166899 |
aaatattcactttgttcatgacaaatattatcatcttttcatgtccacagcaatcatcaactaaacaactcagtattttgacctaaccttaccaagacac |
9166998 |
T |
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| Q |
219 |
ggtgtattcagtatcgcactatgaataaaatacaatccgcttatccac--gg------tgt-attcatcttttatttatacatatgaacatacgaaataa |
309 |
Q |
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| T |
9166999 |
ggtgtattcagtatcgtactatgaataaaatacaatgcacttatccacatggcaccattgtcatatatcttttatttatacatatgaacatacgaaataa |
9167098 |
T |
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| Q |
310 |
gaaagtattaaaggttcacaacttcaatgagagcannnnnnnaattaaaatgttgtgttttcaagcagttcttctctct |
388 |
Q |
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| T |
9167099 |
gaaagtattaaaggttcacaacttcaatgagagcatatttttaattaaaatgttgtgttttcaagcagttcttttctct |
9167177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 9155379 - 9155582
Alignment:
| Q |
19 |
ccaagagccaaggcctgttcttgtacttctcctatgtaatgcaacaacaaatcacacatgaacaaaaaagaaa---agaatcgacctattacaacccaca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| | ||| |||||||||||||||| | |
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| T |
9155379 |
ccaagagccaaggcctgttcttgtacttctcctatgcaatgcaacaccaaatcacacatgaacaaaaaagaaaaacaaaattgacctattacaacccaga |
9155478 |
T |
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| Q |
116 |
tgcaaatattcactttgttcatgacaa--atgttatcatcttttcatgtccacagcaatcatcaactaaacaactcagtattttgacctaaccttaccaa |
213 |
Q |
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|||| ||||||||| |||||||||| | | ||| |||||||||||||||| |||||||||| ||||||||||| |||||||||| ||| |||||| |
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| T |
9155479 |
ggcaataattcactttcttcatgacaaacacataatcctcttttcatgtccacaacaatcatcaattaaacaactcaatattttgacccaacattaccat |
9155578 |
T |
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| Q |
214 |
gaca |
217 |
Q |
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|||| |
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| T |
9155579 |
gaca |
9155582 |
T |
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