View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18261_low_11 (Length: 390)
Name: NF18261_low_11
Description: NF18261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18261_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 16 - 370
Target Start/End: Complemental strand, 41737634 - 41737280
Alignment:
| Q |
16 |
ggaagcattctttttagccaacaactaaaccttttccattatatgatgtcggctacttggataaatcaatgtcattgagctctaactacacattttcagt |
115 |
Q |
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| T |
41737634 |
ggaagcattctttttagccaacaactaaaccttttccattatatgatgtcggctacttggataaatcaatgtcattgagctctaactacacattttcagt |
41737535 |
T |
|
| Q |
116 |
gaacacttcaattcagggtccaacttgcactacctttgaggacaagatatctatgttttctatttaagactcttgaagtatgctacagacctgtgacaat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
41737534 |
gaacacttcaattcagggtccaacttgcactacctttgaggacaagatatctatgttttctatttaagactcttgaattatgctacggacctgtgacaat |
41737435 |
T |
|
| Q |
216 |
gctttctgattatacagtttttatatatgcatactgcaggtagatcaaggcctaggcattggcacccagttcccattcttcaatcgtcaccagctaactc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41737434 |
gctttctgattatacagtttttatatatgcatactgcaggtagatcaaggcctaggcattggcacccagttcccattcttcaatcgtcaccagctaactc |
41737335 |
T |
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| Q |
316 |
tgacacggtttatccagttgatgtttgtggaggaaggagctggtaaaccaccccc |
370 |
Q |
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| T |
41737334 |
tgacacggtttatccagttgatgtttgtggaggaaggagctggtaaaccaccccc |
41737280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 378
Target Start/End: Complemental strand, 4601864 - 4601500
Alignment:
| Q |
21 |
cattctttttagccaacaactaaaccttttccattatatgatgtcggctacttggataaatcaatgtcattgagctctaac-tacacattttcagtgaac |
119 |
Q |
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| T |
4601864 |
cattctttttagccatcaactaaaccttttccattatatgatgtcagctacttggataaatcaatgtcattgagctctaacttaca-attttcagtgaac |
4601766 |
T |
|
| Q |
120 |
acttcaattcagggtccaacttgcactacctttgaggacaagatatctatgttttctatttaagactcttgaagtatgc-------tacagacctgtgac |
212 |
Q |
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|||| |||||| ||||||||||||| | ||||||||||| ||| |||||||||||||||| |||||||||||||||||| || |||||||| | |
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| T |
4601765 |
actttaattcatggtccaacttgcaatgcctttgaggacgagacatctatgttttctattgaagactcttgaagtatgctatggagtatggacctgtggc |
4601666 |
T |
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| Q |
213 |
aatgctttctgattatacagtttttatatatgcatactgcaggtagatcaaggcctaggcattggcacccagttcccattcttcaatcgtcaccagctaa |
312 |
Q |
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|||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4601665 |
aatgctttctgaatatacagttttcatgtatgcgaactgcaggtagatcaaggcctaggcattggcacccagttcccattcttcaatcgtcaccagctaa |
4601566 |
T |
|
| Q |
313 |
ctctgacacggtttatccagttgatgtttgtggaggaaggagctggtaaaccaccccctccggttc |
378 |
Q |
| |
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|||| ||||||||||||||||||||| | ||||| ||||||||||||||||||| || ||||||| |
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| T |
4601565 |
ctctcgcacggtttatccagttgatgtctatggagaaaggagctggtaaaccaccaccaccggttc |
4601500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 248 - 367
Target Start/End: Complemental strand, 24168654 - 24168535
Alignment:
| Q |
248 |
actgcaggtagatcaaggcctaggcattggcacccagttcccattcttcaatcgtcaccagctaactctgacacggtttatccagttgatgtttgtggag |
347 |
Q |
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||||||||||||||||||||| || |||||| | | ||||||||||| || || ||||| ||||| |||| | |||| ||||||||| || ||||||| |
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| T |
24168654 |
actgcaggtagatcaaggccttggtgttggcagcaatttcccattctttaaccgccaccaattaactttgactcagtttctccagttgaagtctgtggag |
24168555 |
T |
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| Q |
348 |
gaaggagctggtaaaccacc |
367 |
Q |
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||||| |||||||||||||| |
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| T |
24168554 |
gaaggtgctggtaaaccacc |
24168535 |
T |
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