View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18261_low_13 (Length: 381)
Name: NF18261_low_13
Description: NF18261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18261_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 281
Target Start/End: Original strand, 4891434 - 4891701
Alignment:
| Q |
9 |
agcacagatgaagaaactggatggaagagcgagaactaaacctttgatattatcagaggacattccttctcgccaactagaagatgaagaacttgccatc |
108 |
Q |
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| T |
4891434 |
agcaccgatgaagaaactggatggaagagcgagaactaaacctttgatattatcagaggacattccttctcgccaactagaagatgaagaacttgccatc |
4891533 |
T |
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| Q |
109 |
tcgcagaatcaaaaaccctagcgagatggaccgagagcacgcaaaattgaaaacctaatcaattatcctggttatggatacagctgtcagaaatggattg |
208 |
Q |
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| T |
4891534 |
tcgcggaatcaaaaaccctagcgagatggaccga-----cgcaaaattgaaaacctaatcaattatcctggttatggatacagctgtcagaaatggattg |
4891628 |
T |
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| Q |
209 |
ttctctttgtctggatcgggaatgaatgaatgctttgttgcaattgcaatttcatatacacaaaaagggaaaa |
281 |
Q |
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| T |
4891629 |
ttctctttgtctggatcgggaatgaatgaatgctttgttgcaattgcaatttcatatacacaaaaagggaaaa |
4891701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 365
Target Start/End: Original strand, 4891738 - 4891789
Alignment:
| Q |
314 |
ttaatattttacggtgtgagtgaaaccactaacaaaacaacgatgtggatgg |
365 |
Q |
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| T |
4891738 |
ttaatattttacggtgtgagtgaaaccactaacaaaacaacgatgtggatgg |
4891789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 440312 - 440042
Alignment:
| Q |
15 |
gatgaagaaactggatggaagagcgagaactaaacctttgatattatcagaggacattccttctcgccaactagaagatgaagaacttgccatctcgcag |
114 |
Q |
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| T |
440312 |
gatgaagaaactggatgaaagagcgagaactaaacctttgatattatcagaggacattccctctcgccaactagaagatgaagaactcgccatctcgcgg |
440213 |
T |
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| Q |
115 |
aatcaaaaaccctagcgagatggaccgagagcacgcaaaattgaaaacctaatcaattatcc-----------tggttatggat---acagctgtcagaa |
200 |
Q |
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|||||||||||||||||||||||| ||||| | |||||||||||||||||| ||||| ||||| ||||||||||||| |
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| T |
440212 |
aatcaaaaaccctagcgagatggatcgagaac------------aaacctaatcaattatcctccttttcccttggttctggatacaacagctgtcagaa |
440125 |
T |
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| Q |
201 |
atggattgttctctttgtctggatcgggaatgaatgaatgctttgttgcaattgcaatttcatatacac--aaaaagggaaaa |
281 |
Q |
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| T |
440124 |
ttggtttgttctctttctctggatcgggaatgaatcaatgttttgttgcaattgcaatttcatatacacagaaaaagggaaaa |
440042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 440026 - 439982
Alignment:
| Q |
319 |
attttacggtgtgagtgaaaccactaacaaaacaacgatgtggat |
363 |
Q |
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||||||| |||||||||| | |||||||||||||||||||||||| |
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| T |
440026 |
attttacagtgtgagtgagatcactaacaaaacaacgatgtggat |
439982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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