View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18261_low_17 (Length: 363)
Name: NF18261_low_17
Description: NF18261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18261_low_17 |
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| [»] scaffold0283 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 44928055 - 44927731
Alignment:
| Q |
18 |
ttattcaacaatcatatcctagattaccagtaactctatgacatgcttttataacttgtgtatgtatggttttataacttgacatgtttctatgatctca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| | |
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| T |
44928055 |
ttattcaacaatcatatcctagattaccagtaactctatgacatgcttttataacttctgtatgaatggttttataacttgacatgtttctatgatctaa |
44927956 |
T |
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| Q |
118 |
attgaaattaattttgtctctagaattgatggcattcaaatttattgttcagtccgcccgtttttacacggatgcatccaatataaatcatttcaggttg |
217 |
Q |
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| T |
44927955 |
attgaaattaattttgtctctagaattgatggcattcaaatttattgttcagtccgc----ttttacacggatgcatccaatataaatcatttcaggttg |
44927860 |
T |
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| Q |
218 |
aactaacttttaactaaattaattttacaaaaacaattttatcatcgcataacaaacacacacttttagaatgacattttgatggttaagtatatgtttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
44927859 |
aactaacttttaactaaattaattttacaaaaacaattttatcatcgcataacaaacacacaattttagaatgacattttgatggttaagtgtatgtttg |
44927760 |
T |
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| Q |
318 |
atattaccgtgggtatatcaaaattacgg |
346 |
Q |
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| T |
44927759 |
atattaccgtgggtatatcaaaattacgg |
44927731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 44936165 - 44936095
Alignment:
| Q |
19 |
tattcaacaatcatatcctagattaccagtaactctatgacatgcttttataacttgtgtatgtatggttt |
89 |
Q |
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| T |
44936165 |
tatttaacaatcatatcctagaataccagtaactctatgacatgcttttttaacttgtgtatgtatggttt |
44936095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 44936049 - 44935997
Alignment:
| Q |
95 |
cttgacatgtttctatgatctcaattgaaattaattttgtctctagaattgat |
147 |
Q |
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| T |
44936049 |
cttgacatgtttctatgatctcaattgaaattaattttgtctctagaattgat |
44935997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 44935896 - 44935849
Alignment:
| Q |
197 |
aatataaatcatttcaggttgaactaacttttaactaaattaatttta |
244 |
Q |
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| T |
44935896 |
aatataaatcatttcaggttcaactaacttttaactaaattaatttta |
44935849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 7505 - 7435
Alignment:
| Q |
19 |
tattcaacaatcatatcctagattaccagtaactctatgacatgcttttataacttgtgtatgtatggttt |
89 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7505 |
tatttaacaatcatatcctagaataccagtaactctatgacatgcttttttaacttgtgtatgtatggttt |
7435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 7389 - 7337
Alignment:
| Q |
95 |
cttgacatgtttctatgatctcaattgaaattaattttgtctctagaattgat |
147 |
Q |
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| T |
7389 |
cttgacatgtttctatgatctcaattgaaattaattttgtctctagaattgat |
7337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 7236 - 7189
Alignment:
| Q |
197 |
aatataaatcatttcaggttgaactaacttttaactaaattaatttta |
244 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7236 |
aatataaatcatttcaggttcaactaacttttaactaaattaatttta |
7189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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