View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18261_low_19 (Length: 355)
Name: NF18261_low_19
Description: NF18261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18261_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 33374114 - 33374443
Alignment:
| Q |
17 |
actaagagcttcaacaatattataaaaccttcctaacttaggatccatccatcttctaacaatttcttctctcttttgttctgtatcaaacacacactta |
116 |
Q |
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| T |
33374114 |
actaagagcttcaacaacattataaaacctccctaacttaggatccatccatcttctaacaatttcttctctcttttgttctgtatcaaacacacactta |
33374213 |
T |
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| Q |
117 |
aaatctttccacaacatattcacctcgctatgttcgctatacgacaaaaacttctttcctgttattagctccatcagaaccattccatagccaaaaacat |
216 |
Q |
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| T |
33374214 |
aaatctttccacaacatattcacctcgctatgttcgctatacgacaaaaacttctttcctgttattagctccatcagaaccattccataacctaaaacat |
33374313 |
T |
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| Q |
217 |
caacttttgttatcataggattctttgtagttcttgcaacagaaaaatttgctatcttggccttaaattttgagtcaagaagaatgttacttgatttgat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33374314 |
caacttttgttatcataggattctttgtagttcttgcaacagaaaaatttgctatcttggccttaaattttgagtcaagaagaatgttacttgatttgat |
33374413 |
T |
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| Q |
317 |
gttcctatggactatacatggttgtctgtg |
346 |
Q |
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| T |
33374414 |
gttcctatggactatacatggttgtgtgtg |
33374443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 7169824 - 7169767
Alignment:
| Q |
261 |
aaatttgctatcttggccttaaattttgagtcaagaagaatgttacttgatttgatgt |
318 |
Q |
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| T |
7169824 |
aaattcgctatcttggccttaaaatttgagccaagaaggatattacttgttgtgatgt |
7169767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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