View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18261_low_20 (Length: 344)

Name: NF18261_low_20
Description: NF18261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18261_low_20
NF18261_low_20
[»] chr1 (14 HSPs)
chr1 (13-319)||(26970608-26970905)
chr1 (250-321)||(7843100-7843171)
chr1 (249-320)||(47555069-47555140)
chr1 (251-315)||(422299-422363)
chr1 (272-315)||(47682253-47682296)
chr1 (250-316)||(28013018-28013084)
chr1 (264-314)||(42663232-42663282)
chr1 (272-321)||(10923101-10923150)
chr1 (250-314)||(10598200-10598264)
chr1 (272-320)||(38759864-38759912)
chr1 (211-313)||(43579522-43579625)
chr1 (250-295)||(4146708-4146753)
chr1 (272-321)||(14758406-14758455)
chr1 (272-320)||(32216429-32216477)
[»] chr4 (13 HSPs)
chr4 (13-321)||(47073059-47073358)
chr4 (250-320)||(14246507-14246577)
chr4 (272-328)||(25184491-25184547)
chr4 (272-321)||(34361275-34361324)
chr4 (272-321)||(36493473-36493522)
chr4 (272-315)||(879338-879381)
chr4 (272-315)||(6864413-6864456)
chr4 (272-315)||(49376345-49376388)
chr4 (253-315)||(5914938-5915000)
chr4 (272-321)||(33816300-33816349)
chr4 (272-321)||(35020815-35020864)
chr4 (272-320)||(4205362-4205410)
chr4 (272-320)||(47254118-47254166)
[»] chr8 (13 HSPs)
chr8 (54-185)||(41190673-41190804)
chr8 (272-322)||(43643358-43643408)
chr8 (272-321)||(5299710-5299759)
chr8 (272-320)||(16446640-16446688)
chr8 (272-320)||(37970284-37970332)
chr8 (268-328)||(38111049-38111109)
chr8 (272-315)||(4132456-4132499)
chr8 (276-315)||(41362803-41362842)
chr8 (268-314)||(1872582-1872628)
chr8 (249-327)||(3859359-3859436)
chr8 (264-314)||(5018556-5018606)
chr8 (268-322)||(30650896-30650950)
chr8 (272-313)||(35859311-35859352)
[»] chr2 (13 HSPs)
chr2 (30-165)||(1354322-1354457)
chr2 (52-165)||(1361208-1361321)
chr2 (250-321)||(6357136-6357207)
chr2 (228-322)||(18514393-18514488)
chr2 (272-320)||(31862230-31862278)
chr2 (272-315)||(3177317-3177360)
chr2 (251-322)||(7565607-7565678)
chr2 (268-315)||(17244776-17244823)
chr2 (272-323)||(18494055-18494106)
chr2 (272-315)||(19289105-19289148)
chr2 (250-324)||(59488-59562)
chr2 (272-321)||(45328068-45328116)
chr2 (272-320)||(4167300-4167348)
[»] chr3 (21 HSPs)
chr3 (250-313)||(5125534-5125597)
chr3 (264-322)||(42663983-42664041)
chr3 (252-320)||(11019794-11019862)
chr3 (272-315)||(20373027-20373070)
chr3 (272-321)||(37203437-37203486)
chr3 (250-315)||(54607960-54608025)
chr3 (272-320)||(37158077-37158125)
chr3 (272-315)||(26941024-26941067)
chr3 (272-315)||(39283021-39283064)
chr3 (272-315)||(51212541-51212584)
chr3 (264-314)||(23165291-23165341)
chr3 (255-313)||(29923035-29923093)
chr3 (255-313)||(29972188-29972246)
chr3 (272-322)||(40552016-40552066)
chr3 (250-295)||(31706508-31706553)
chr3 (272-321)||(36012509-36012558)
chr3 (268-313)||(53811435-53811480)
chr3 (272-312)||(1090062-1090102)
chr3 (272-320)||(3362624-3362672)
chr3 (272-320)||(11467179-11467227)
chr3 (272-324)||(46297517-46297569)
[»] chr5 (18 HSPs)
chr5 (249-315)||(21321064-21321130)
chr5 (272-321)||(23954550-23954599)
chr5 (268-312)||(12080405-12080449)
chr5 (251-321)||(8762858-8762928)
chr5 (249-315)||(22616804-22616870)
chr5 (251-315)||(13888423-13888487)
chr5 (252-312)||(26412147-26412207)
chr5 (272-315)||(12910733-12910776)
chr5 (272-322)||(19120237-19120287)
chr5 (272-321)||(24886465-24886514)
chr5 (272-313)||(27318244-27318285)
chr5 (272-313)||(31786402-31786443)
chr5 (272-321)||(34853843-34853892)
chr5 (272-321)||(35511230-35511279)
chr5 (272-321)||(40133763-40133812)
chr5 (272-320)||(2888194-2888242)
chr5 (272-320)||(38527986-38528034)
chr5 (272-320)||(43308409-43308457)
[»] scaffold0312 (1 HSPs)
scaffold0312 (251-315)||(8209-8273)
[»] chr7 (13 HSPs)
chr7 (272-320)||(37703258-37703306)
chr7 (250-306)||(49002539-49002595)
chr7 (268-315)||(4902653-4902700)
chr7 (272-322)||(31520499-31520549)
chr7 (250-315)||(8759551-8759616)
chr7 (251-324)||(25470737-25470810)
chr7 (272-313)||(31578831-31578872)
chr7 (272-315)||(9355591-9355634)
chr7 (272-315)||(24212095-24212138)
chr7 (272-315)||(35353461-35353504)
chr7 (272-310)||(10481958-10481996)
chr7 (249-310)||(23402045-23402106)
chr7 (272-320)||(26980659-26980707)
[»] chr6 (5 HSPs)
chr6 (268-321)||(6613655-6613708)
chr6 (251-315)||(25441803-25441867)
chr6 (268-302)||(4104349-4104383)
chr6 (251-315)||(4487724-4487788)
chr6 (263-315)||(21016730-21016782)
[»] scaffold0022 (1 HSPs)
scaffold0022 (272-321)||(145773-145822)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 319
Target Start/End: Original strand, 26970608 - 26970905
Alignment:
Q  13 aatatcatctttaagaagataagctagttcaaggaatttgttcatgtttagtggaatgtccatagtgttttctgcacctggtgggaattgctctacgtgt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26970608 aatatcatctttaagaagataagctagttcaaggaatttgttcatgtttagtggaatgtccatagtgttttcagcacctggtgggaattgctctacgtgt 26970707  T
Q  113 ggtaaaggcaaccttactaatttgataaatgcttcaatggttttgggtgttttggcaaaggagatgaagaagatgaagaacaaaatgaataattacattg 212  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         ||||||||||||||||||||||||||||||    
T  26970708 ggtaaaggcaaccttactaatttgataaatgcttcaatggttttaggtgttttggcaaagg---------agatgaagaacaaaatgaataattacattg 26970798  T
Q  213 gtccatcggcagaatactagttgacatgacgtaagggttatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccataga 312  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26970799 gtccatcagcagaatactagttgacatgacgtaaggattatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccataaa 26970898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 7843100 - 7843171
Alignment:
Q  250 ttatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagcaccctt 321  Q
    ||||||||||||  ||  ||||||||||||| |||||||||| |||  ||||||||||||||||||||||||    
T  7843100 ttatgctattggccaaccaaaataactttttaaaaaaagtcattttcttgactacaccatagaagcaccctt 7843171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 320
Target Start/End: Original strand, 47555069 - 47555140
Alignment:
Q  249 gttatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagcaccct 320  Q
    ||||| |||||||| ||| |||||||||||||||||||||||||||| || ||| |||| ||||||| ||||    
T  47555069 gttatactattggttaaacaaaataactttttcaaaaaagtcagtttcctaactgcaccgtagaagccccct 47555140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 315
Target Start/End: Original strand, 422299 - 422363
Alignment:
Q  251 tatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||| ||||||| ||||||||| |||||||||||||||||| |||  |||| |||||||||||||    
T  422299 tatgttattggttaaataaaatgactttttcaaaaaagtcattttcttgacaacaccatagaagc 422363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 47682296 - 47682253
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||||| |||||||||||||||||||||||| ||||||||||||    
T  47682296 taacttgttcaaaaaagtcagtttactgactgcaccatagaagc 47682253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 28013018 - 28013084
Alignment:
Q  250 ttatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagca 316  Q
    ||||||||||||  ||  ||||||||||||||||||||| || |||  |||||||||||||||||||    
T  28013018 ttatgctattggctaaccaaaataactttttcaaaaaagacattttcttgactacaccatagaagca 28013084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 42663282 - 42663232
Alignment:
Q  264 aaataaaataactttttcaaaaaagtcagtttactgactacaccatagaag 314  Q
    |||||||||||||||||||||||||||| |||  ||||| |||||||||||    
T  42663282 aaataaaataactttttcaaaaaagtcaatttcgtgactgcaccatagaag 42663232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 10923101 - 10923150
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccctt 321  Q
    |||||||||||||| ||||||||| |||||| |||||||||||| |||||    
T  10923101 taactttttcaaaagagtcagttttctgactgcaccatagaagctccctt 10923150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 10598200 - 10598264
Alignment:
Q  250 ttatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaag 314  Q
    |||| |||||||| ||| |||| |||||||||||||||||||||||  ||||| |||| ||||||    
T  10598200 ttattctattggttaaacaaaacaactttttcaaaaaagtcagtttcttgactgcaccgtagaag 10598264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 38759864 - 38759912
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccct 320  Q
    ||||||||||||||||||||||| | ||||| |||||||||||| ||||    
T  38759864 taactttttcaaaaaagtcagttaattgactgcaccatagaagctccct 38759912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 313
Target Start/End: Original strand, 43579522 - 43579625
Alignment:
Q  211 tggtccatcggcagaatactagttgacatgacgt-aagggttatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccat 309  Q
    ||||||| | |||||| | ||||||||||| | | || |||||| ||||||   ||| |||||||| ||||  |||||||||||||||||||| ||||||    
T  43579522 tggtccaccagcagaacattagttgacatggcattaacggttatactattgactaaacaaaataacattttttaaaaagtcagtttactgactgcaccat 43579621  T
Q  310 agaa 313  Q
    ||||    
T  43579622 agaa 43579625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 4146753 - 4146708
Alignment:
Q  250 ttatgctattggtaaaataaaataactttttcaaaaaagtcagttt 295  Q
    |||| |||||| | ||| ||||||||||||||||||||||||||||    
T  4146753 ttattctattgattaaacaaaataactttttcaaaaaagtcagttt 4146708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 14758406 - 14758455
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccctt 321  Q
    ||||||||||||||||||||||||  ||||| |||| ||||||| |||||    
T  14758406 taactttttcaaaaaagtcagtttcgtgactgcaccgtagaagctccctt 14758455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 32216429 - 32216477
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccct 320  Q
    ||||||||| |||||||||||||| |||||| |||| ||||||| ||||    
T  32216429 taacttttttaaaaaagtcagttttctgactgcaccgtagaagctccct 32216477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 47073358 - 47073059
Alignment:
Q  13 aatatcatctttaagaagataagctagttcaaggaatttgttcatgtttagtggaatgtccatagtgttttctgcacctggtgggaattgctctacgtgt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47073358 aatatcatctttaagaagataagctagttcaaggaatttgttcatgtttagtggaatgtccatagtgttttctgcacctggtgggaattgctctacgtgt 47073259  T
Q  113 ggtaaaggcaaccttactaatttgataaatgcttcaatggttttgggtgttttggcaaaggagatgaagaagatgaagaacaaaatgaataattacattg 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||    
T  47073258 ggtaaaggcaaccttactaatttgataaatgcttcaatggttttgggtgttttggcaaaggagatga---------agaacaaaatgaataattacattg 47073168  T
Q  213 gtccatcggcagaatactagttgacatgacgtaagggttatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccataga 312  Q
    ||||||| ||||| | || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  47073167 gtccatcagcagactcctggttgacatgacataagggttatgctattggtaaaataaaataactttttcaaaatagtcaatttactgactacaccataga 47073068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 250 - 320
Target Start/End: Original strand, 14246507 - 14246577
Alignment:
Q  250 ttatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagcaccct 320  Q
    ||||||||||||  ||||||||| |||||||||||||||||| |||  |||||||||||||||||||||||    
T  14246507 ttatgctattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagcaccct 14246577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 272 - 328
Target Start/End: Original strand, 25184491 - 25184547
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcacccttatatata 328  Q
    |||||||||||||||||||||||| |||||| |||||||||||| ||||| ||||||    
T  25184491 taactttttcaaaaaagtcagttttctgactgcaccatagaagctcccttttatata 25184547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 34361324 - 34361275
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccctt 321  Q
    |||||||||||||||||||||||| |||||| |||| ||||||| |||||    
T  34361324 taactttttcaaaaaagtcagtttcctgactgcaccgtagaagctccctt 34361275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 36493522 - 36493473
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccctt 321  Q
    |||||||||||||||||||| ||| |||||| |||||||||||| |||||    
T  36493522 taactttttcaaaaaagtcaatttcctgactgcaccatagaagctccctt 36493473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 879381 - 879338
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||||||||  ||||||||||||| |||||||||||||||||||    
T  879381 taactttttttaaaaagtcagttttctgactacaccatagaagc 879338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 6864413 - 6864456
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||||||||||||||||||||||| |||||| |||| |||||||    
T  6864413 taactttttcaaaaaagtcagttttctgactgcaccgtagaagc 6864456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 49376345 - 49376388
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||||||||||||||||||||||| |||||| |||| |||||||    
T  49376345 taactttttcaaaaaagtcagtttcctgactgcaccgtagaagc 49376388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 315
Target Start/End: Complemental strand, 5915000 - 5914938
Alignment:
Q  253 tgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||||||||| ||| ||||| ||||||| |||||||||| |||  ||||| ||||||||||||    
T  5915000 tgctattggttaaacaaaatgacttttttaaaaaagtcatttttttgactgcaccatagaagc 5914938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 33816349 - 33816300
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccctt 321  Q
    |||||||||||||||||||||||| |||||| || | ||||||| |||||    
T  33816349 taactttttcaaaaaagtcagtttcctgactgcatcgtagaagctccctt 33816300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 35020864 - 35020815
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccctt 321  Q
    ||||||||| |||| ||||||||| ||||||||||| ||||||| |||||    
T  35020864 taacttttttaaaagagtcagttttctgactacaccgtagaagctccctt 35020815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 4205362 - 4205410
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccct 320  Q
    ||||||||||||||||||||||||  ||||| |||| ||||||| ||||    
T  4205362 taactttttcaaaaaagtcagtttcttgactgcaccgtagaagctccct 4205410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 47254118 - 47254166
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccct 320  Q
    ||||||||||||||||||||||||  ||||| |||| ||||||| ||||    
T  47254118 taactttttcaaaaaagtcagtttgatgactccaccgtagaagctccct 47254166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 8e-52; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 54 - 185
Target Start/End: Complemental strand, 41190804 - 41190673
Alignment:
Q  54 tcatgtttagtggaatgtccatagtgttttctgcacctggtgggaattgctctacgtgtggtaaaggcaaccttactaatttgataaatgcttcaatggt 153  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||| |    
T  41190804 tcatgtttactggaatgtccatagtgttttctgcacctggtgggaattgctctacgtgtggtaaaggtaaccttactaatttgataaatggttgaatgct 41190705  T
Q  154 tttgggtgttttggcaaaggagatgaagaaga 185  Q
    ||||||||||||||||||||||| || |||||    
T  41190704 tttgggtgttttggcaaaggagacgacgaaga 41190673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 43643408 - 43643358
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccctta 322  Q
    |||||||||||||||||||||||| |||||| |||||||||||| ||||||    
T  43643408 taactttttcaaaaaagtcagttttctgactgcaccatagaagctccctta 43643358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 5299759 - 5299710
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccctt 321  Q
    ||||||||||||||||||||||||  ||||| |||||||||||| |||||    
T  5299759 taactttttcaaaaaagtcagtttcatgactgcaccatagaagctccctt 5299710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 16446688 - 16446640
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccct 320  Q
    |||||||||||||||||||||||| |||||| |||| ||||||| ||||    
T  16446688 taactttttcaaaaaagtcagtttcctgactgcaccgtagaagctccct 16446640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 37970332 - 37970284
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccct 320  Q
    |||||||||||||||||||| ||| |||||| |||||||||||| ||||    
T  37970332 taactttttcaaaaaagtcactttcctgactgcaccatagaagctccct 37970284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 38111049 - 38111109
Alignment:
Q  268 aaaataactttttcaaaaaagtcagtttactgactacaccatagaagcacccttatatata 328  Q
    |||||||||||| |||||| ||||||||||| ||| |||||||||||| |||  |||||||    
T  38111049 aaaataacttttccaaaaatgtcagtttactcactgcaccatagaagcgcccagatatata 38111109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 4132499 - 4132456
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||||||| ||||||||||||||| |||||| ||||||||||||    
T  4132499 taacttttccaaaaaagtcagtttgctgactgcaccatagaagc 4132456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 41362803 - 41362842
Alignment:
Q  276 tttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||||||||||||||||||| |||||| ||||||||||||    
T  41362803 tttttcaaaaaagtcagtttcctgactgcaccatagaagc 41362842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 1872628 - 1872582
Alignment:
Q  268 aaaataactttttcaaaaaagtcagtttactgactacaccatagaag 314  Q
    ||||| |||||||||||||||||| |||  |||||||||||||||||    
T  1872628 aaaatgactttttcaaaaaagtcattttcttgactacaccatagaag 1872582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 3859359 - 3859436
Alignment:
Q  249 gttatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagcacccttatatat 327  Q
    ||||| |||||||  ||| |||||||||||||||||||||| ||||| || ||| |||| ||||||  |||||||||||    
T  3859359 gttatactattggctaaacaaaataactttttcaaaaaagt-agtttcctaactgcaccgtagaagtgcccttatatat 3859436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 5018556 - 5018606
Alignment:
Q  264 aaataaaataactttttcaaaaaagtcagtttactgactacaccatagaag 314  Q
    |||||||||||||||||||||||||||| |||  ||| | |||||||||||    
T  5018556 aaataaaataactttttcaaaaaagtcaatttcgtgattgcaccatagaag 5018606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 30650950 - 30650896
Alignment:
Q  268 aaaataactttttcaaaaaagtcagtttactgactacaccatagaagcaccctta 322  Q
    |||||||||||||||||||||||| |||  ||||| |||| ||||||| ||||||    
T  30650950 aaaataactttttcaaaaaagtcaatttcttgactgcaccgtagaagctccctta 30650896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 313
Target Start/End: Original strand, 35859311 - 35859352
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaa 313  Q
    |||||||||||||||||||||||| |||||| |||| |||||    
T  35859311 taactttttcaaaaaagtcagtttcctgactgcaccgtagaa 35859352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 1354457 - 1354322
Alignment:
Q  30 gataagctagttcaaggaatttgttcatgtttagtggaatgtccatagtgttttctgcacctggtgggaattgctctacgtgtggtaaaggcaaccttac 129  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||    
T  1354457 gataggctagttcaaggtatttgttcatgtttattggaatgtccatagtgttttctgcacctggtgggagttgctctatgtgtggtaaaggcaatcttac 1354358  T
Q  130 taatttgataaatgcttcaatggttttgggtgtttt 165  Q
     |||||||| |||| |||||||||||||||||||||    
T  1354357 caatttgatgaatggttcaatggttttgggtgtttt 1354322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 1361321 - 1361208
Alignment:
Q  52 gttcatgtttagtggaatgtccatagtgttttctgcacctggtgggaattgctctacgtgtggtaaaggcaaccttactaatttgataaatgcttcaatg 151  Q
    |||||||||| || |||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| ||||| ||||| || |||| |||||||    
T  1361321 gttcatgtttggttgaatgtccatagtgttttctgcgcctggtgggagttgctctatgtgtggtaaaggcaatcttaccaatttaatgaatggttcaatg 1361222  T
Q  152 gttttgggtgtttt 165  Q
    ||||||||||||||    
T  1361221 gttttgggtgtttt 1361208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 6357136 - 6357207
Alignment:
Q  250 ttatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagcaccctt 321  Q
    ||||||||||||  |||| |||| |||||||||||||||||| |||  ||||||||||||||||||||||||    
T  6357136 ttatgctattggctaaattaaatgactttttcaaaaaagtcattttcttgactacaccatagaagcaccctt 6357207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 322
Target Start/End: Complemental strand, 18514488 - 18514393
Alignment:
Q  228 actagttgacatgacgt-aagggttatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagcaccctta 322  Q
    ||||||||||||||| | ||  ||||| ||||| |  ||| |||||||||||||||||||| ||||||| |||||| |||| ||||||| ||||||    
T  18514488 actagttgacatgacattaacagttatactattagctaaacaaaataactttttcaaaaaattcagtttcctgactccaccgtagaagccccctta 18514393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 31862230 - 31862278
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccct 320  Q
    |||||||||||||||||||||||| | |||| |||||||||||| ||||    
T  31862230 taactttttcaaaaaagtcagtttcccgactgcaccatagaagctccct 31862278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 3177317 - 3177360
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||||||||||||||||||||||| |||||| |||| |||||||    
T  3177317 taactttttcaaaaaagtcagtttcctgactgcaccgtagaagc 3177360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 322
Target Start/End: Original strand, 7565607 - 7565678
Alignment:
Q  251 tatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagcaccctta 322  Q
    |||||||||||| ||| ||||| ||||||| |||||||||| |||  ||||| |||| ||||||| ||||||    
T  7565607 tatgctattggttaaacaaaatgacttttttaaaaaagtcatttttttgactgcaccgtagaagctccctta 7565678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 17244823 - 17244776
Alignment:
Q  268 aaaataactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    ||||||| |||||||||||||||||||| |||||| ||| ||||||||    
T  17244823 aaaataattttttcaaaaaagtcagttttctgactgcactatagaagc 17244776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 18494106 - 18494055
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcacccttat 323  Q
    ||||||||||||||||||||||||  |||||||||| || |||| |||||||    
T  18494106 taactttttcaaaaaagtcagtttcatgactacaccgtataagctcccttat 18494055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 19289148 - 19289105
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||||||||||||||||||||||| || ||| ||||||||||||    
T  19289148 taactttttcaaaaaagtcagtttcctaactgcaccatagaagc 19289105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 59488 - 59562
Alignment:
Q  250 ttatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagcacccttata 324  Q
    |||||| |||||  |||||||||||||||||||||||||||| ||   | ||||||||||| |||  ||||||||    
T  59488 ttatgcaattggctaaataaaataactttttcaaaaaagtcatttgcttaactacaccataaaaggccccttata 59562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 45328068 - 45328116
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccctt 321  Q
    |||||||||||||||||||||||| |||||| |||| ||||||| |||||    
T  45328068 taactttttcaaaaaagtcagttt-ctgactgcaccgtagaagctccctt 45328116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 4167300 - 4167348
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccct 320  Q
    |||||||||||||||||||| ||| |||||| |||| ||||||| ||||    
T  4167300 taactttttcaaaaaagtcaattttctgactgcaccgtagaagctccct 4167348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 5125534 - 5125597
Alignment:
Q  250 ttatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaa 313  Q
    ||||| ||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  5125534 ttatgttattggttaaataaaataactttttcaaaaaagtcattttcttgactacaccatagaa 5125597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 42664041 - 42663983
Alignment:
Q  264 aaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagcaccctta 322  Q
    |||||||||||||||||| ||||||||| |||  |||||||||||||||||| ||||||    
T  42664041 aaataaaataactttttctaaaaagtcattttcttgactacaccatagaagccccctta 42663983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 320
Target Start/End: Original strand, 11019794 - 11019862
Alignment:
Q  252 atgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagcaccct 320  Q
    ||||||||||  ||||||||| |||||||||||||| ||| |||  |||||||||||||||||| ||||    
T  11019794 atgctattggctaaataaaatgactttttcaaaaaaatcatttttttgactacaccatagaagccccct 11019862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 20373070 - 20373027
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  20373070 taactttttcaaaaaagtcagtttcctgactgcaccatagaagc 20373027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 37203437 - 37203486
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccctt 321  Q
    |||||||||||||||||||||||| |||||| |||| ||||||| |||||    
T  37203437 taactttttcaaaaaagtcagtttcctgactgcaccgtagaagctccctt 37203486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 54607960 - 54608025
Alignment:
Q  250 ttatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    ||||| ||||||  ||||||||| |||||||||||||||||| |||  | ||||||||||||||||    
T  54607960 ttatgttattggctaaataaaatgactttttcaaaaaagtcattttcttaactacaccatagaagc 54608025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 37158077 - 37158125
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccct 320  Q
    |||||||||||||||||||||||| |||||| |||| ||||||| ||||    
T  37158077 taactttttcaaaaaagtcagtttcctgactgcaccgtagaagctccct 37158125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 26941067 - 26941024
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||||||||||||||||||||||| |||||| |||| |||||||    
T  26941067 taactttttcaaaaaagtcagttttctgactgcaccgtagaagc 26941024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 39283021 - 39283064
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||||||||||||||||||||||| |||||| |||| |||||||    
T  39283021 taactttttcaaaaaagtcagtttcctgactgcaccgtagaagc 39283064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 51212584 - 51212541
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||    
T  51212584 taactttttcaaaaatgtcagttttctgactgcaccatagaagc 51212541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 23165341 - 23165291
Alignment:
Q  264 aaataaaataactttttcaaaaaagtcagtttactgactacaccatagaag 314  Q
    |||||||||||||||||||||||||||| |||  ||||| |||| ||||||    
T  23165341 aaataaaataactttttcaaaaaagtcaatttcatgactgcaccgtagaag 23165291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 29923093 - 29923035
Alignment:
Q  255 ctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaa 313  Q
    ||||| || ||||||||| ||||||| |||||||||| |||  ||||||||||||||||    
T  29923093 ctattagttaaataaaatgactttttaaaaaaagtcattttcttgactacaccatagaa 29923035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 29972246 - 29972188
Alignment:
Q  255 ctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaa 313  Q
    ||||| || ||||||||| ||||||| |||||||||| |||  ||||||||||||||||    
T  29972246 ctattagttaaataaaatgactttttaaaaaaagtcattttcttgactacaccatagaa 29972188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 40552066 - 40552016
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccctta 322  Q
    |||||||||||||||||||||||| | |||| |||| ||||||| ||||||    
T  40552066 taactttttcaaaaaagtcagtttccagactgcaccgtagaagctccctta 40552016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 31706553 - 31706508
Alignment:
Q  250 ttatgctattggtaaaataaaataactttttcaaaaaagtcagttt 295  Q
    |||| |||||| | ||| ||||||||||||||||||||||||||||    
T  31706553 ttatactattgattaaacaaaataactttttcaaaaaagtcagttt 31706508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 36012509 - 36012558
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccctt 321  Q
    ||||||||||||||||||||||||  ||||| |||| ||||||| |||||    
T  36012509 taactttttcaaaaaagtcagtttcatgactgcaccgtagaagctccctt 36012558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 53811480 - 53811435
Alignment:
Q  268 aaaataactttttcaaaaaagtcagtttactgactacaccatagaa 313  Q
    |||||||||||||||| ||||||||||| |||||| |||| |||||    
T  53811480 aaaataactttttcaagaaagtcagttttctgactgcaccgtagaa 53811435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 1090062 - 1090102
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccataga 312  Q
    ||||||||| |||||||||||||| ||||||||||| ||||    
T  1090062 taacttttttaaaaaagtcagtttcctgactacaccgtaga 1090102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 3362624 - 3362672
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccct 320  Q
    |||||||| ||||||||||| ||| |||||| |||||||||||| ||||    
T  3362624 taacttttccaaaaaagtcaatttcctgactgcaccatagaagctccct 3362672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 11467179 - 11467227
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccct 320  Q
    ||||||||||||||||||||||||  ||||| |||| ||||||| ||||    
T  11467179 taactttttcaaaaaagtcagtttgatgactgcaccgtagaagctccct 11467227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 46297569 - 46297517
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcacccttata 324  Q
    ||||||||| ||||||||||||||  ||||| |||| ||||||| ||||||||    
T  46297569 taacttttttaaaaaagtcagttttttgactgcaccgtagaagctcccttata 46297517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 21321064 - 21321130
Alignment:
Q  249 gttatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    ||||| |||||||  ||| |||||||||||||||||||||||||||| ||| || ||||||||||||    
T  21321064 gttatactattggctaaacaaaataactttttcaaaaaagtcagttttctggctgcaccatagaagc 21321130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 23954599 - 23954550
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccctt 321  Q
    |||||||||||||||||||||||| |||||| |||||||||||| |||||    
T  23954599 taactttttcaaaaaagtcagtttcctgactgcaccatagaagctccctt 23954550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 12080449 - 12080405
Alignment:
Q  268 aaaataactttttcaaaaaagtcagtttactgactacaccataga 312  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||    
T  12080449 aaaataactttttcaaaaaagtcaatttcctgactacaccataga 12080405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 8762928 - 8762858
Alignment:
Q  251 tatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagcaccctt 321  Q
    |||||||||||| ||| ||||| ||||||| |||||||||| |||  ||||| |||||||||||| |||||    
T  8762928 tatgctattggttaaacaaaatgacttttttaaaaaagtcatttttttgactgcaccatagaagctccctt 8762858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 22616804 - 22616870
Alignment:
Q  249 gttatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    ||||| |||||||  ||| |||||||||||| ||||||| ||||||| |||||| ||||||||||||    
T  22616804 gttatactattggctaaacaaaataacttttccaaaaaaatcagttttctgactgcaccatagaagc 22616870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 315
Target Start/End: Original strand, 13888423 - 13888487
Alignment:
Q  251 tatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    ||||| |||||| ||||||||| ||||||| |||||||||| |||  | ||||||||||||||||    
T  13888423 tatgcaattggttaaataaaatgacttttttaaaaaagtcattttttttactacaccatagaagc 13888487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 26412147 - 26412207
Alignment:
Q  252 atgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccataga 312  Q
    ||||||||||  ||||||||| ||||||||||| |||||| |||  |||||||||||||||    
T  26412147 atgctattggctaaataaaatgactttttcaaataagtcattttcttgactacaccataga 26412207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 12910733 - 12910776
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||||||| ||||||||||||||| |||||| ||||||||||||    
T  12910733 taacttttccaaaaaagtcagtttcctgactgcaccatagaagc 12910776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 19120237 - 19120287
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccctta 322  Q
    ||||||||||||||||||||||||  ||||| |||| ||||||| ||||||    
T  19120237 taactttttcaaaaaagtcagtttcatgactgcaccttagaagctccctta 19120287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 24886465 - 24886514
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccctt 321  Q
    ||||||||||||||||||||||||  ||||| ||||||| |||| |||||    
T  24886465 taactttttcaaaaaagtcagtttcttgactgcaccataaaagctccctt 24886514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 27318285 - 27318244
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaa 313  Q
    ||||||||| |||||||||||||| |||||| ||||||||||    
T  27318285 taacttttttaaaaaagtcagttttctgactgcaccatagaa 27318244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 31786443 - 31786402
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaa 313  Q
    |||||||||||||||||||||||| |||| | ||||||||||    
T  31786443 taactttttcaaaaaagtcagtttcctgattgcaccatagaa 31786402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 34853892 - 34853843
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccctt 321  Q
    |||||||| ||||||||||||||| | |||| |||||||||||| |||||    
T  34853892 taacttttccaaaaaagtcagtttcccgactgcaccatagaagctccctt 34853843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 35511279 - 35511230
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccctt 321  Q
    ||||||||| |||||||||||||| |||||| |||| ||||||| |||||    
T  35511279 taacttttttaaaaaagtcagtttcctgactgcaccgtagaagctccctt 35511230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 40133763 - 40133812
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccctt 321  Q
    |||||||||||||||||||| ||| |||||| |||| ||||||| |||||    
T  40133763 taactttttcaaaaaagtcaattttctgactgcaccgtagaagctccctt 40133812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 2888242 - 2888194
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccct 320  Q
    |||||||||||||||||||| ||| |||||| |||| ||||||| ||||    
T  2888242 taactttttcaaaaaagtcaattttctgactgcaccgtagaagccccct 2888194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 38528034 - 38527986
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccct 320  Q
    |||||||||||||||| ||||||| |||||| |||| ||||||| ||||    
T  38528034 taactttttcaaaaaaatcagtttcctgactgcaccgtagaagctccct 38527986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 43308457 - 43308409
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccct 320  Q
    |||||||||||||||||||||||| || ||| |||||| ||||| ||||    
T  43308457 taactttttcaaaaaagtcagtttcctaactgcaccattgaagctccct 43308409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 8273 - 8209
Alignment:
Q  251 tatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||| ||||||| ||||||||| |||||||||||||||||| |||  |||| |||||||||||||    
T  8273 tatgttattggttaaataaaatgactttttcaaaaaagtcattttcttgacaacaccatagaagc 8209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 37703306 - 37703258
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccct 320  Q
    |||||||||||||||||||| |||||||||| |||||||||||| ||||    
T  37703306 taactttttcaaaaaagtcaatttactgactgcaccatagaagctccct 37703258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 49002539 - 49002595
Alignment:
Q  250 ttatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacac 306  Q
    |||| |||||| | |||||||||||||||||||||||| ||||||| ||||||||||    
T  49002539 ttatactattgattaaataaaataactttttcaaaaaaatcagttttctgactacac 49002595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 315
Target Start/End: Original strand, 4902653 - 4902700
Alignment:
Q  268 aaaataactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||||||||||||||||||||||| ||| |||||| ||||||||||||    
T  4902653 aaaataactttttcaaaaaagtcaattttctgacttcaccatagaagc 4902700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 31520549 - 31520499
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccctta 322  Q
    |||||||||||||||||||||||| || ||| |||||||||||| ||||||    
T  31520549 taactttttcaaaaaagtcagtttcctaactgcaccatagaagctccctta 31520499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 8759551 - 8759616
Alignment:
Q  250 ttatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    ||||| ||||||  ||||||||| |||||||||||||||||| |||  || |||||||||||||||    
T  8759551 ttatgttattggctaaataaaatgactttttcaaaaaagtcattttcttggctacaccatagaagc 8759616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 25470737 - 25470810
Alignment:
Q  251 tatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagcacccttata 324  Q
    |||||||||||| ||| ||||| ||||||| |||||||||| |||  ||||| |||||||||||| ||| ||||    
T  25470737 tatgctattggttaaacaaaatgacttttttaaaaaagtcatttttttgactgcaccatagaagctcccatata 25470810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 31578872 - 31578831
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaa 313  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  31578872 taactttttcaaaaaagtcagtttcctgactgcaccatagaa 31578831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 9355634 - 9355591
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||||||||||||||||||||||| ||| || ||||||||||||    
T  9355634 taactttttcaaaaaagtcagtttcctgcctgcaccatagaagc 9355591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 24212095 - 24212138
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||||||||||||||||||||||| |||||| |||| |||||||    
T  24212095 taactttttcaaaaaagtcagtttcctgactgcaccgtagaagc 24212138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 35353461 - 35353504
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||||||||||||||||||||||| |||||| |||| |||||||    
T  35353461 taactttttcaaaaaagtcagtttcctgactgcaccttagaagc 35353504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 10481958 - 10481996
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccata 310  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  10481958 taactttttcaaaaaagtcagttttctgactgcaccata 10481996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 23402106 - 23402045
Alignment:
Q  249 gttatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccata 310  Q
    ||||| |||||||  ||| ||||||||||||| ||||||||||||||  ||||| |||||||    
T  23402106 gttatactattggctaaacaaaataacttttttaaaaaagtcagttttttgactgcaccata 23402045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 26980659 - 26980707
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccct 320  Q
    ||||||||||||||||||||||||  ||||| |||| ||||||| ||||    
T  26980659 taactttttcaaaaaagtcagtttcatgactgcaccttagaagctccct 26980707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 6613708 - 6613655
Alignment:
Q  268 aaaataactttttcaaaaaagtcagtttactgactacaccatagaagcaccctt 321  Q
    |||||||||||||||||||||||||||| |||||| |||| || |||| |||||    
T  6613708 aaaataactttttcaaaaaagtcagtttcctgactgcaccgtacaagctccctt 6613655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 315
Target Start/End: Original strand, 25441803 - 25441867
Alignment:
Q  251 tatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||||||||||| ||| ||||| ||||||| |||||||||| |||  ||||| ||||||||||||    
T  25441803 tatgctattggttaaacaaaatgacttttttaaaaaagtcatttttttgactgcaccatagaagc 25441867  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 302
Target Start/End: Original strand, 4104349 - 4104383
Alignment:
Q  268 aaaataactttttcaaaaaagtcagtttactgact 302  Q
    |||||||||||||||||||||||||||| ||||||    
T  4104349 aaaataactttttcaaaaaagtcagttttctgact 4104383  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 4487788 - 4487724
Alignment:
Q  251 tatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||||||||||| ||| ||||| ||||||| |||||||||| |||  | ||| ||||||||||||    
T  4487788 tatgctattggttaaacaaaatgacttttttaaaaaagtcatttttttaactgcaccatagaagc 4487724  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 21016782 - 21016730
Alignment:
Q  263 aaaataaaataactttttcaaaaaagtcagtttactgactacaccatagaagc 315  Q
    |||| ||||||||||||||||||||| || ||| |||||| |||| |||||||    
T  21016782 aaaaaaaaataactttttcaaaaaagacaattttctgactgcaccgtagaagc 21016730  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 145822 - 145773
Alignment:
Q  272 taactttttcaaaaaagtcagtttactgactacaccatagaagcaccctt 321  Q
    |||||||||||||||||||| ||| |||||| |||| ||||||| |||||    
T  145822 taactttttcaaaaaagtcaatttcctgactgcaccgtagaagctccctt 145773  T

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