View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18261_low_25 (Length: 302)
Name: NF18261_low_25
Description: NF18261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18261_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 41497697 - 41497962
Alignment:
| Q |
17 |
catttgcaaacttggttcctagttgaactgctagtgatgaacttggagttggatcctcattcttcacagcaattccataaatagcattcatttcatgtac |
116 |
Q |
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| T |
41497697 |
catttgcaaacttggttcctagttgaactgctagtgatgaacttggagttggatcctcattcttcacagcaattccataaatagcattcatttcatgtac |
41497796 |
T |
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| Q |
117 |
tccttgggacatacacctttcatcgtcgtcgttgttgtcatcaaagtgcatgatctcaatatcctttttcactttcattgttcccttacctagcataaaa |
216 |
Q |
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| T |
41497797 |
tccttgggacatacacctttcatcgtcgtcgttgttgtcatcaaagtgcatgatctcaatatcctttttcactttcattgttcccttacctagcataaaa |
41497896 |
T |
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| Q |
217 |
gagatatatttaagctacacataacattttccaaacatgataacactcaagcaaaaacttggtaac |
282 |
Q |
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| T |
41497897 |
gagatatatttaagctacacataacattttccaaacatgataacactcaagcaaaaacttggtaac |
41497962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 60 - 235
Target Start/End: Original strand, 41506983 - 41507158
Alignment:
| Q |
60 |
tggagttggatcctcattcttcacagcaattccataaatagcattcatttcatgtactccttgggacatacacctttcatcgtcgtcgttgttgtcatca |
159 |
Q |
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| T |
41506983 |
tggacttggatactcattcttcacgacaagtccgtaaatagccttcttttcatgtactccttgagacatacgccaatcttcatcgtcgtcatcatcatca |
41507082 |
T |
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| Q |
160 |
aagtgcatgatctcaatatcctttttcactttcattgttcccttacctagcataaaagagatatatttaagctaca |
235 |
Q |
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| T |
41507083 |
aggtgaatgatctcaatatcctttttcactttcattgttcccatacctagcataaaagagatatgtttaagctaca |
41507158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 41501726 - 41501973
Alignment:
| Q |
17 |
catttgcaaacttggttcctagttgaactgctagtgatgaacttggagttggatcctcattcttcacagcaattccataaatagcattcatttcatgtac |
116 |
Q |
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| T |
41501726 |
catttacaaacttggtcttttgttgaactactagtgatgaacttggacttggatcctcattcttcacgacaagtccatatatagccttcttttcatgtac |
41501825 |
T |
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| Q |
117 |
tccttgggacatacacctttcatcgtcgtcgttgttgtcatcaaagtgcatgatctcaatatcctttttcactttcattgttcccttacctagcataaaa |
216 |
Q |
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| T |
41501826 |
tccttcagacatacaccaattatcaac------------atcaaggtgcatgatctcaatatcctttttcactttaattgttcccatgcctagcataaaa |
41501913 |
T |
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| Q |
217 |
gagatatatttaagctacacataacattttccaaacatgataacactcaagcaaaaacttgg |
278 |
Q |
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| T |
41501914 |
gatatatgtttaagct--acataacatctactaaccatgacaatactcaagcataaacttgg |
41501973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 33078041 - 33078143
Alignment:
| Q |
17 |
catttgcaaacttggttcctagttgaactgctagtgatgaacttggagttggatcctcattcttcacagcaattccataaatagcattcatttcatgtac |
116 |
Q |
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| T |
33078041 |
catttgcaaacttggttttt-gttgaactgcaattgatgaacttgaatttggaagctcattcttcacggcaattccagaaaaagacttcttttcatgtac |
33078139 |
T |
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| Q |
117 |
tcct |
120 |
Q |
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|||| |
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| T |
33078140 |
tcct |
33078143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 151
Target Start/End: Original strand, 41522163 - 41522254
Alignment:
| Q |
60 |
tggagttggatcctcattcttcacagcaattccataaatagcattcatttcatgtactccttgggacatacacctttcatcgtcgtcgttgt |
151 |
Q |
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| T |
41522163 |
tggacttggaacctcattcttcacagcaattccaaaaacagctttcttttcatgtactcctcgagacatagacccaccatcatcgtcgttgt |
41522254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 41513228 - 41513316
Alignment:
| Q |
60 |
tggagttggatcctcattcttcacagcaattccataaatagcattcatttcatgtactccttgggacatacacctttcatcgtcgtcgt |
148 |
Q |
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| T |
41513228 |
tggacttggaacctcattcttcgcagcaaatccaaaaaaagctttcttttcatgtactcctcgagacatagacccaacatcgtcgtcgt |
41513316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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