View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18261_low_26 (Length: 291)
Name: NF18261_low_26
Description: NF18261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18261_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 12473201 - 12473431
Alignment:
| Q |
18 |
gtatggattggagagctagccaagctcaaagagaaagttctaaccaacaaaaccaaaatttctaaatccaaaaatggtttagaagaagagaaggaagttg |
117 |
Q |
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| T |
12473201 |
gtatggattggagagctagccaagctcaaagagaaagttctaaccaacaaaaccaaaatttctaaatccaaaaatggtttagaagaagagaaggaagtgg |
12473300 |
T |
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| Q |
118 |
gaagggaagctcaaaaggaggtcataggtgctcaaagagacactacaaccttatctgagtcaacaatatgtttgcttatggatagatttgtgccttgcta |
217 |
Q |
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| T |
12473301 |
gaagagaagctcaaaaggaggtcataggtgctcaaagagacactacaaccttgtctgagtcaacaatatgtttgcttatggatagatttgtgccttgcta |
12473400 |
T |
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| Q |
218 |
aaatatgttgtttattcaaatatatcaatgt |
248 |
Q |
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| T |
12473401 |
aaatatgttgtttattcaactatatcaatgt |
12473431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 224
Target Start/End: Original strand, 12457217 - 12457350
Alignment:
| Q |
91 |
atggtttagaagaagagaaggaagttggaagggaagctcaaaaggaggtcataggtgctcaaagagacactacaaccttatctgagtcaacaatatgttt |
190 |
Q |
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| T |
12457217 |
atggtttagaagaagagaaagaagtcggaatgcaatctcaaaaggagatcatagctgttcatagagacactgcaactatttcagagtcaacaatatgttt |
12457316 |
T |
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| Q |
191 |
gcttatggatagatttgtgccttgctaaaatatg |
224 |
Q |
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| T |
12457317 |
gcttatggatagatttgtgccctgctaatatatg |
12457350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 12473457 - 12473492
Alignment:
| Q |
246 |
tgtaatgaaatgttatatatgttgtgtttagtataat |
282 |
Q |
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| T |
12473457 |
tgtaatgaaatgttatatatgttgtg-ttagtataat |
12473492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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