View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18261_low_27 (Length: 282)
Name: NF18261_low_27
Description: NF18261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18261_low_27 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr8 (6 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 8158454 - 8158719
Alignment:
| Q |
18 |
tcaagttccaatatgcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctacttttttagctcttgtggactttttgatcttgcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8158454 |
tcaagttccaatatgcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctacttttttagctcttgtggactttttgatcttgcc |
8158553 |
T |
|
| Q |
118 |
aacaagttaaaggcctacttttttcgctctgaaatacctgattatgacgatgcaagagaagtacccaaagatatg-aagcctttgtgttgnnnnnnngac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
8158554 |
aacaagttaaaggcctacttttttcgctctgaaatacctgattatgacgatgcaagagaagtacccaaagatatgcaagcctttgtgttgaaaaaaagac |
8158653 |
T |
|
| Q |
217 |
acgaactcattgaaattgtatcagaggttgatgataaaatttctgaagctcttcatggtggcagcc |
282 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8158654 |
acgaactcattgaaattgtatcagagattgatgataaaatttctgaagctcttcatggtggcagcc |
8158719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 44317562 - 44317282
Alignment:
| Q |
18 |
tcaagttccaatatgcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctacttttttagctct--------tgtg-gacttttt |
108 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| ||||||||| |||| | || ||| |||||||| |
|
|
| T |
44317562 |
tcaagttccaatacacattgacgattgttatattggatttgttgatcttgttaagttagaggcctactattttctccctaaaatgtttgttagacttttt |
44317463 |
T |
|
| Q |
109 |
gatcttgccaacaagttaaaggcctacttttttcgctctgaaatacctgattatgacgatg--caag----agaagtacccaaagatatg-aagcctttg |
201 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| |||||||| |||| ||||| | |||| |||| |||||||||| |||||||| ||||||||| |
|
|
| T |
44317462 |
gatcttctcaacaagttaaaggcttacttttttccctctgaaacaccttattataaggatgtacaagtaggagaagtacccgaagatatgcaagcctttg |
44317363 |
T |
|
| Q |
202 |
tgttgnnnnnnngacacgaactcattgaaattgtatcagaggttgatgataaaatttctgaagctcttcatggtggcagcc |
282 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
44317362 |
tgttgaagaaaagacacgaactcattcaaattgtatcagaggttgatgataaactttctgaagcttttcatggtggaagcc |
44317282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 122 - 282
Target Start/End: Complemental strand, 44302165 - 44301998
Alignment:
| Q |
122 |
agttaaaggcctacttttttcgctctgaaatacctgattatgacgatgcaa------gagaagtacccaaagatatg-aagcctttgtgttgnnnnnnng |
214 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||| |||||| | |||||||||||||||||||| |||||||||||||| | |
|
|
| T |
44302165 |
agttaaaggcctacttttttcgctttgaaaaacctgattataacgatgtagaagtaggagaagtacccaaagatatgcaagcctttgtgttgaagaaaag |
44302066 |
T |
|
| Q |
215 |
acacgaactcattgaaattgtatcagaggttgatgataaaatttctgaagctcttcatggtggcagcc |
282 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
44302065 |
acgcgaactcattgaaattgtatcggaggttgatgataaactttctgaagcttttcatggtggaagcc |
44301998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 282
Target Start/End: Complemental strand, 44307278 - 44307100
Alignment:
| Q |
111 |
tcttgccaacaagttaaaggcctacttttttcgctctgaaatacctgattatgacgatgca-----aga-gaagtacccaaagatatg-aagcctttgtg |
203 |
Q |
| |
|
|||||||||||||||||| | |||||||||| ||||| ||| ||||||||| ||||||| | ||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
44307278 |
tcttgccaacaagttaaaaggctactttttttgctctcaaacacctgattaagacgatgtagaagtagaagaagtagccaaagatatgcaagcctttgtg |
44307179 |
T |
|
| Q |
204 |
ttgnnnnnnngacacgaactcattgaaattgtatcagaggttgatgataaaatttctgaagctcttcatggtggcagcc |
282 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
44307178 |
ttgaaaaaaagacgtgaactcattgaaattgtatcagaggttgatgataaactttctgaagattttcatggtggcagcc |
44307100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 43896926 - 43896646
Alignment:
| Q |
18 |
tcaagttccaatatgcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctacttttttagc---------tcttgtggacttttt |
108 |
Q |
| |
|
|||||||||||||| | ||||| |||| | | |||||||||||| |||||||||| | |||||||||| |||| || | | | |||||||| |
|
|
| T |
43896926 |
tcaagttccaatatactttgacaattggtgttttggatttgttgttcttgtcaagatgaaggcctactattttcgccttaaaatgtttgttagacttttt |
43896827 |
T |
|
| Q |
109 |
gatcttgccaacaagttaaaggcctacttttttcgctctgaaatacctgatt------atgacgatgcaagagaagtacccaaagatatg-aagcctttg |
201 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||| ||| ||| || | ||| |||||||| |||||||| ||||||||| |
|
|
| T |
43896826 |
gatcttgtcaacaagttaaaggcctacttttttcgctctgaaacaccttattataagcatgtagaagtaagtgaagtacctgaagatatgcaagcctttg |
43896727 |
T |
|
| Q |
202 |
tgttgnnnnnnngacacgaactcattgaaattgtatcagaggttgatgataaaatttctgaagctcttcatggtggcagcc |
282 |
Q |
| |
|
||||| || ||||||||||||||| || |||||||||||||||||| ||||||||||| |||| |||||||||| |
|
|
| T |
43896726 |
tgttgaagaaaagaagcgaactcattgaaatcgtctcagaggttgatgataaactttctgaagcttttcacggtggcagcc |
43896646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 44302218 - 44302146
Alignment:
| Q |
18 |
tcaagttccaatatgcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctactttttt |
90 |
Q |
| |
|
||||||||||||| |||| |||||| |||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44302218 |
tcaagttccaatacacattcacgattcttatattggatttgttgatcttgtcgagttaaaggcctactttttt |
44302146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 44307375 - 44307317
Alignment:
| Q |
32 |
gcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctactttttt |
90 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||| || |||| |
|
|
| T |
44307375 |
gcattgacgattgttatattggatttgttgatctcgtcaagttaaaggcctcctatttt |
44307317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 282
Target Start/End: Complemental strand, 4085012 - 4084755
Alignment:
| Q |
32 |
gcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctacttttttagctct--------------tg-tggactttttgatcttgc |
116 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||| ||| || | ||| ||||||||||| |
|
|
| T |
4085012 |
gcattgacgattgttatattggatttgttgatcttgttaagttaaaggcatacttttttacgtctaaatctaaaccttttgatagaccttttgatcttgt |
4084913 |
T |
|
| Q |
117 |
caacaagttaaaggcctacttttttcgctctgaaatacctgattatgacgatgcaagagaagtacccaaagatatgaa-gcctttgtgttgnnnnnnnga |
215 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| ||||||||||| ||| |||| |||| ||||| |||||||||||| || |
|
|
| T |
4084912 |
caacaagttaaaggcctaccttttttgctctgaaacgtctgattatgacaatg---------tacctgaagaaatgaaagcctttgtgttgaaaaaaaga |
4084822 |
T |
|
| Q |
216 |
cacgaactcattgaaattgtatcagaggttgatgataaaatttctgaagctcttcatggtggcagcc |
282 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4084821 |
cgcgaactcattgaaattgtatcagaggttgatgataaaatttatgaagctcttcatggtggcagcc |
4084755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 281
Target Start/End: Complemental strand, 18702416 - 18702246
Alignment:
| Q |
121 |
aagttaaaggcctacttttttcgctctgaaatacctgattatgacgatgc---------aagagaagtacccaaagatatg-aagcctttgtgttgnnnn |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| | ||| | ||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
18702416 |
aagttaaaggcctacttttttcgctctgaaacacctgattataattatgatgtagaagtaggagaaatacccgaagatatgcaagcctttgtgttgaaga |
18702317 |
T |
|
| Q |
211 |
nnngacacgaactcattgaaattgtatcagaggttgatgataaaatttctgaagctcttcatggtggcagc |
281 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
18702316 |
aaagacgcgaactcattgaaattgtgtcagaggttgatgataaactttctaaagcttttcatggtggcagc |
18702246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 18702519 - 18702448
Alignment:
| Q |
18 |
tcaagttccaatatgcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctacttttt |
89 |
Q |
| |
|
||||||||||||| | || |||||| |||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18702519 |
tcaagttccaatacactttaacgattattatattggatttgttgatcttgtcaagttagaggcctacttttt |
18702448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University