View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18261_low_3 (Length: 631)
Name: NF18261_low_3
Description: NF18261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18261_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 170 - 388
Target Start/End: Complemental strand, 39745006 - 39744796
Alignment:
| Q |
170 |
tgatccttttatgggaaggtaatgacttttcaagtgtgaaagcaagttggagatgagatcctattcggtatgtgtatggtatggccctttacttaatcaa |
269 |
Q |
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| T |
39745006 |
tgatccttttatg--aaggtaatgacttt-caagtgtgaaagcaagttggagatgagatcctattcggtatgtgtatggtatggccctttacttaatcaa |
39744910 |
T |
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| Q |
270 |
tggatgaaccnnnnnnngttgaaattagctttttcatttttgttcttttgatgcttaagtaacggtcagtgttcattcataataatcaatcatgcacttt |
369 |
Q |
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| T |
39744909 |
tggatgaaccaaaaaaagttgaaattagctttttcatttttgttcttttgatgcttaagtaacggtcagtgttcattcataat----aatcatgcacttt |
39744814 |
T |
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| Q |
370 |
ttgtttttgacaatatacg |
388 |
Q |
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| T |
39744813 |
tt-tttttgacaatatacg |
39744796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 469 - 592
Target Start/End: Complemental strand, 39743864 - 39743740
Alignment:
| Q |
469 |
cgaagtaaaattattttactagctgaaaatatctatacaattactggcattgtgattagattcatgaatcgtg-tatgagatgtgattggtagttggaac |
567 |
Q |
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| T |
39743864 |
cgaagtaaaattattttactagctgaaaatatatatacaattactggcattgtgattagattcatgaatcatgttatgagatgtgattgttagttggaac |
39743765 |
T |
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| Q |
568 |
acattttttggtccaacaccttctc |
592 |
Q |
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| T |
39743764 |
acattttttggtccaacaccttctc |
39743740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 39745168 - 39745072
Alignment:
| Q |
8 |
aggagcagagacatgaaaagcatcaggatgagcttcacgtggatttggaacaacacggtttgccatgatcacatagcaaagaacacaatacaacaca |
104 |
Q |
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| T |
39745168 |
aggaccagagacatgaaaagcatcaggatgagcttcacgtggatttggaacaacacggtttgccatgatcacatagcaaagaacacaatacaacaca |
39745072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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