View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18261_low_33 (Length: 248)
Name: NF18261_low_33
Description: NF18261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18261_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 16917660 - 16917879
Alignment:
| Q |
20 |
gattggtataagatagctcatattccta---ttaaaccagattttgtggatccaattaacggtaatttaaagatttttctgtaatttagtaaataactta |
116 |
Q |
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| T |
16917660 |
gattggtataagatagctcatgttcctaattttgaatcagattttgtgcatcgaattaacggtaattttaagatttttccgtaatttagtaaataagtta |
16917759 |
T |
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| Q |
117 |
ccttttctcctaaagccagtattctcataaaattcttgatgttttctaacacattgaattgttatgtgcagaagaagagtatagcgattcagacagtgaa |
216 |
Q |
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| T |
16917760 |
cgttttttactaaagccagtattctcataaaattcctgatgttttctaacacattgaattgttatgtgcagaagaagagtatagcgattcagacagtgaa |
16917859 |
T |
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| Q |
217 |
tcggacatggaggttgatga |
236 |
Q |
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| T |
16917860 |
ttggacatggaggttgatga |
16917879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 54 - 236
Target Start/End: Original strand, 16912523 - 16912705
Alignment:
| Q |
54 |
cagattttgtggatccaattaacggtaatttaaagatttttctgtaatttagtaaataacttaccttttctcctaaagccagtattctcataaaattctt |
153 |
Q |
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| T |
16912523 |
cagatgttgtgcatccaattaacggtaatttaaagattttgctataatttagtaaataagttacgttttttactaaagccagtattctcataaaattctt |
16912622 |
T |
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| Q |
154 |
gatgttttctaacacattgaattgttatgtgcagaagaagagtatagcgattcagacagtgaatcggacatggaggttgatga |
236 |
Q |
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| T |
16912623 |
gatgttttctaacacattgaattgttatgtgcagaagaagagtatagcaattcagacaatgaattggacatggaggttgatga |
16912705 |
T |
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