View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18261_low_34 (Length: 243)
Name: NF18261_low_34
Description: NF18261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18261_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 37067498 - 37067725
Alignment:
| Q |
1 |
atttcactcccttcatcttcaattttgtaattaatttaatggtattgtaaatgatcttataatgttattcaatgaaaaaattccaggttgcagtgtaccc |
100 |
Q |
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| T |
37067498 |
atttcactcccttcatcttcaattttgtaattaatttaatggtattgtaaatgatcttataatgttattcaatgaaaaaattccaggttgcagtgtaccc |
37067597 |
T |
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| Q |
101 |
aggaaatgtactagcattgcatgtatctaaaccacaagggtttaagtacactagtggacagtatatttatgttaattgttcagatatctccccatttgaa |
200 |
Q |
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| T |
37067598 |
gggaaatgtactagcattgcatgcatctaaaccacaagggtttaagtacactagtggacagtatatttatgttaattgttcagatatctccccatttgaa |
37067697 |
T |
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| Q |
201 |
tggtatgtgcctaattaaagttccaaat |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
37067698 |
tggtatgtgcctaattaaagttccaaat |
37067725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 203
Target Start/End: Complemental strand, 46561324 - 46561206
Alignment:
| Q |
85 |
aggttgcagtgtacccaggaaatgtactagcattgcatgtatctaaaccacaagggtttaagtacactagtggacagtatatttatgttaattgttcaga |
184 |
Q |
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| T |
46561324 |
aggttgcagtgtaccccggaaatgtgttggccttgcatgtgtctaaaccacaaggatttaagtaccacagtggacaatatatttttgttaattgcgcaga |
46561225 |
T |
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| Q |
185 |
tatctccccatttgaatgg |
203 |
Q |
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| T |
46561224 |
tgtctccccatttcaatgg |
46561206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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