View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18261_low_5 (Length: 512)
Name: NF18261_low_5
Description: NF18261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18261_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 14 - 494
Target Start/End: Complemental strand, 1154133 - 1153653
Alignment:
| Q |
14 |
aaatcagcagcatcagcttgaagtaaattaaccttctcaacaacaatggtagcaacaacatttcttacactatgagcatcttgataaaatccaggaacag |
113 |
Q |
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| T |
1154133 |
aaatcagcagcatcagcttgaagtaaattaaccttctcaacaacaatggtagcaacaacatttcttacactatgagcatcttgataaaatccaggaacag |
1154034 |
T |
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| Q |
114 |
aagcttttcctaatgggattccacggtacaacacagtaaaactggactcgccgtacttgatccctaccttattaggattagccgcttggaatagaagacg |
213 |
Q |
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| T |
1154033 |
aagcttttcctaatgggattccacggtacaacacagtaaaactggactcgccgtacttgatccctaccttattaggattagccgcttggaatagaagacg |
1153934 |
T |
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| Q |
214 |
aattgttaaggaaagtgaagcgccggtgccggtggggatattgttcggtgtttgtgtgattcccatgtattggactccgacttgttgaagatcgaattgt |
313 |
Q |
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| T |
1153933 |
aattgttaaggaaagtgaagcgccggcgccggtgggtatattgttcggtgtttgtgtgattcccatgtattggactccgacttgttgaagatcgaattgt |
1153834 |
T |
|
| Q |
314 |
ggnnnnnnnggtttgactgcgaggaggatgatgaggacgattgcgagtgtgagaagtgccaggaatgagaggaggaggaagaggcagcagcaacagcctt |
413 |
Q |
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| T |
1153833 |
ggtttttttggtttgactgcgaggaggatgatgaggacgattgcgagtgtgagaagtgccaggaatgataggaggaggaagaggcagcagcaacagcctt |
1153734 |
T |
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| Q |
414 |
ttagggaagctgaggaggaggaacgagcgggtgttcttgggtagtattgagggtggttgttgaagccgtttgagtaggatg |
494 |
Q |
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| T |
1153733 |
ttagggaagctgaggaggaggaacgagctggtgttcttgggtagtattgagggtggttgttgaagccgtttgagtaggatg |
1153653 |
T |
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Back To:
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Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 269 - 468
Target Start/End: Original strand, 7355616 - 7355812
Alignment:
| Q |
269 |
gtgattcccatgtattggactccgacttgttgaagatcgaattgtggnnnnnnnggtttgactgcgaggaggatgatgaggacgattgcgagtgtgagaa |
368 |
Q |
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||||| |||||||| || || |||||||||||||||||||||||||| | ||||||| ||||| |||||||||||| |||||||| ||||||| |
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| T |
7355616 |
gtgatgcccatgtactgaacaccgacttgttgaagatcgaattgtggttttttggttttgactacgaggtggatgatgaggaaaattgcgagggtgagaa |
7355715 |
T |
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| Q |
369 |
gtgccaggaatgagaggaggaggaagaggcagcagcaacagccttttagggaagctgaggaggaggaacgagcgggtgttcttgggtagtattgagggtg |
468 |
Q |
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| T |
7355716 |
gttccaagaatgagaggaggaggaaaaggcagcaacaac---cttttaaggaggtgaaggaggaggaacgagttggtgttcgtgggtattgttgagggtg |
7355812 |
T |
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