View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18261_low_9 (Length: 402)

Name: NF18261_low_9
Description: NF18261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18261_low_9
NF18261_low_9
[»] chr5 (1 HSPs)
chr5 (44-339)||(10098995-10099284)


Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 44 - 339
Target Start/End: Original strand, 10098995 - 10099284
Alignment:
Q  44 tattatatatatgggcagatattttgagnnnnnnnatcttcaccaaatcaatcttgattttttggggcttgggtggtggtgtgttaatgttatgatgaga 143  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||||||| | |||||||||||||||||||||||||||       |||||||    
T  10098995 tattatatatatgggcagatattttgagtttttttatcttcaccaaatcaatcttggtgttttggggcttgggtggtggtgtgttac------gatgaga 10099088  T
Q  144 ggacaaatatgtggtgagattaaggacaagaaaaactctcacctgaggagagtttctactcaatattagaagaacgaaaagatgatgttctacaactaca 243  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10099089 ggacaaatatgtggtgatattaaggacaagaaaaactctcacctgaggagagtttctactcaatattagaagaacgaaaagatgatgttctacaactaca 10099188  T
Q  244 gatttatgcgttatctaagtgaaaaatttaatttaatttagagtataaattaaacaatatcaaatgttgatgaataaatacgattcatatctccct 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10099189 gatttatgcgttatctaagtgaaaaatttaatttaatttagagtataaattaaacaatatcaaatgttgatgaataaatacgattcatatctccct 10099284  T

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