View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18262_high_2 (Length: 364)
Name: NF18262_high_2
Description: NF18262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18262_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 35364371 - 35364703
Alignment:
| Q |
16 |
aattaatccctcagagaaatatctagaaaactaacagtacaatgtatgaatcaaaccatgggatccatggccaggacagtgctaagattcatagggtaca |
115 |
Q |
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| T |
35364371 |
aattaatccctcagagaaatatctagaaaactaatagtacaatgcatgaatcaaaccatgggatccatggccagaacagtgctaagattcatagggtaca |
35364470 |
T |
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| Q |
116 |
tatactcattggagccattcatgatttgttggactatgattctgcaagctttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttg |
215 |
Q |
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| T |
35364471 |
tatactcattggagccattcaagatttgttggactatgattctgcaagctttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttg |
35364570 |
T |
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| Q |
216 |
gcacaagtttgcaagaggtgtgcataatttaatcccattgtatgggccatactcacaacaagctttctttgatgtaacaaatcctgttcaccaataattc |
315 |
Q |
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| T |
35364571 |
gcacaagtttgcaagaggtgtgcataatttaatcccattgtatgggccatactcacaacaagctttctttgatgtaacaaatcctgttcaccaataattc |
35364670 |
T |
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| Q |
316 |
gttgtaagttagaaaataattacgaaacccttt |
348 |
Q |
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| T |
35364671 |
gttgtaagttagaaaataattatgaaacccttt |
35364703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 21 - 303
Target Start/End: Original strand, 35376140 - 35376422
Alignment:
| Q |
21 |
atccctcagagaaatatctagaaaactaacagtacaatgtatgaatcaaaccatgggatccatggccaggacagtgctaagattcatagggtacatatac |
120 |
Q |
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| T |
35376140 |
atccctgagagaaatgtctaaaaaactaatagtgcaatgcatgaatcaaactatgggatccatggcgagaacagtgcttagattcatagggtacatatac |
35376239 |
T |
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| Q |
121 |
tcattggagccattcatgatttgttggactatgattctgcaagctttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcaca |
220 |
Q |
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| T |
35376240 |
tcattggagccagtcaagatctgttgcactatgattctgctagctttttcagatggatggaatggatcccaaaatgcataaaggtctcgattttggcaca |
35376339 |
T |
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| Q |
221 |
agtttgcaagaggtgtgcataatttaatcccattgtatgggccatactcacaacaagctttctttgatgtaacaaatcctgtt |
303 |
Q |
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| T |
35376340 |
agtttgaaaggggtgtgcatagtccaatcccattgtaagggccttgtccacaacaagctatctttgatgtaacaaatcctgtt |
35376422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 63 - 303
Target Start/End: Original strand, 35357627 - 35357867
Alignment:
| Q |
63 |
gaatcaaaccatgggatccatggccaggacagtgctaagattcatagggtacatatactcattggagccattcatgatttgttggactatgattctgcaa |
162 |
Q |
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| T |
35357627 |
gaatcaaaccatggaatccatggcgagaacagtgctaagattcatagggttcatatacaggttggatccaatgaacatctgttggactatgattctgcta |
35357726 |
T |
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| Q |
163 |
gctttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcacaagtttgcaagaggtgtgcataatttaatcccattgtatgggc |
262 |
Q |
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| T |
35357727 |
gctttttcagatggatgaaatgcatcccaaaatgcataaaggtttcgatttgggcacaattttgaaataggtgtacacagtccaatcccgttgaatcgcc |
35357826 |
T |
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| Q |
263 |
catactcacaacaagctttctttgatgtaacaaatcctgtt |
303 |
Q |
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| | |||||||||| | ||||| |||||||||||||||| |
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| T |
35357827 |
cttgaccacaacaagcatcctttgctgtaacaaatcctgtt |
35357867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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