View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18262_low_1 (Length: 803)
Name: NF18262_low_1
Description: NF18262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18262_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-126; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 5258472 - 5258733
Alignment:
| Q |
10 |
tgagatgaataaatatgtgacataaattaaaattacagacctaggtaaatgataagtatgattgatggggtatattcagtcaattcaaagatttatatag |
109 |
Q |
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| T |
5258472 |
tgagataaataaatatgtgaaataaattaaaattacagaactaggtaaataataaatatgattgatggggtatattcagtcaattcaaagatttatatag |
5258571 |
T |
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| Q |
110 |
aaaaggaaataaaatattaatgtaattcaaaatatataatatgcaatgttttaactatatgcatgctactagcatatggacacaccgctttattggcagt |
209 |
Q |
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| T |
5258572 |
aaaaggaaataaaatattactgtaattcacaatatataatatgcaatgttttaactatatgcatgctactagcatatggacacaccgctttattggcagt |
5258671 |
T |
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| Q |
210 |
gtgtgtcctctgtcccagaattgtgtctcaacgggtcttacaacccccataccctcaccacc |
271 |
Q |
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| T |
5258672 |
gtgtgtcctctgtcccagaattgtgtctcaacggatcttacaacccccataccctcaccacc |
5258733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 308 - 473
Target Start/End: Original strand, 5258790 - 5258955
Alignment:
| Q |
308 |
aaaaccaaaccatggttttttgaactgcaactatcattttctttcctaaacaacaaactcctcgtgaactgcatgtgaaccttgttctttagagatctgg |
407 |
Q |
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| T |
5258790 |
aaaaccaaaccatggttttttgaactacaactatcattttctttcctaaacaacaaactcctcgtgaactgcatgtgaaccttgttctttagagatctgg |
5258889 |
T |
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| Q |
408 |
ttccttaattactactacaaacaaacggtgtcaccttttcttctcatgtttcaggtgattcaactg |
473 |
Q |
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| T |
5258890 |
ttccttaattactactacaaacaaacggtgtcaccttttcttctcatgtttcaggtgattcaactg |
5258955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 611 - 686
Target Start/End: Original strand, 5259093 - 5259168
Alignment:
| Q |
611 |
gtagcatcaaaatcgtgtcttgcttggtggaagtggttgcagaagcagtgacactctggtttggttcttaaagttc |
686 |
Q |
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| T |
5259093 |
gtagcatcaaaattgtgtcttgcttggtggaagtggttgcagaagcagcgacactctggtttggttcttaaagttc |
5259168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 787
Target Start/End: Original strand, 5259234 - 5259267
Alignment:
| Q |
754 |
gaagtttttggtgaatattgatgattcataataa |
787 |
Q |
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| T |
5259234 |
gaagtttttggtgaatattgatgattcataataa |
5259267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 516 - 548
Target Start/End: Original strand, 5258998 - 5259030
Alignment:
| Q |
516 |
ggaaatgttgctacttcatgttcttcattaaca |
548 |
Q |
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| T |
5258998 |
ggaaatgttgctacttcatgttcttcattaaca |
5259030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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