View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18262_low_2 (Length: 460)
Name: NF18262_low_2
Description: NF18262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18262_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Original strand, 13472509 - 13472933
Alignment:
| Q |
18 |
aaacatacaataagagataggtggagacatatttaaatcttagaaaatatacaatcaatctaagaggatgcgttgaataaatagccgacgtctaatctca |
117 |
Q |
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| T |
13472509 |
aaacatacaataagagataggtggagacatatttaaatcttagaaaatatacaatcaatctaagaggatgcgttgaataaatagccgacgtctaatctca |
13472608 |
T |
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| Q |
118 |
gcacaatctttctattctttgcaacttattttacaaatcgtttcttacaacaaacnnnnnnnattaagccttgatttaaaatagtgcatacttgaacggt |
217 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13472609 |
gcacaatctttctattcattgcaacttattttacaaatcgtttcttacaacaaactttttttattaagccttgatttaaaatagtgcatacttgaacggt |
13472708 |
T |
|
| Q |
218 |
aaaacctataacacagtccctaactgctatgcgaggatagtctaaattcaatattcataagaaatgaaacagacgatgcatcattcagtcaatactcatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13472709 |
aaaacctataacacagtccctaactgctatgcgaggatagtctaaattcaatattcataagaaatgaaacagacgatgcatcattcagtcaatactcatg |
13472808 |
T |
|
| Q |
318 |
ctgcttcttcnnnnnnngccaatactcatgcaagttaaggaaaatcaatcaacattaaacaaatgaagccctaaattcgacaagaaagaataaacgaagt |
417 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13472809 |
ctgcttcttcaaaaaaagccaacactcatgcaagttaaggaaaatcaatcaatattaaacaaatgaagccctaaattcgacaagaaagaataaacgaagt |
13472908 |
T |
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| Q |
418 |
tgacatgtcgatggaaatagcatat |
442 |
Q |
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| T |
13472909 |
tgacatgtcgatggaaatagcatat |
13472933 |
T |
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