View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18262_low_4 (Length: 332)
Name: NF18262_low_4
Description: NF18262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18262_low_4 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 5275750 - 5276063
Alignment:
| Q |
19 |
gcctaactgagacagctttaggcaaagatacaagtactggactagatagagtttgtagcttgcaatctgacgaaataaattgaacatgttcctccatcat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5275750 |
gcctaactgagacagctttaggcaaagatacaagtactggactagatagagtttgtagcttgcaatctgatgaaataaattgaacatgttcctccatcat |
5275849 |
T |
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| Q |
119 |
aattttgttaatcaaattcagcaaaacttgttccaattcttctccatcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaa |
218 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5275850 |
aattttgttaatcaaattcatcaaaacttgttccaattcttctccatcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaa |
5275949 |
T |
|
| Q |
219 |
tcccaaactggaaaatttttccttggcatcacaaagtctctttctctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaacc |
318 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5275950 |
tcccacactggaaaattcttccttggcatcacaaagtctctttctctaagcctcaaactagggcaatagtcccctgcaccatcaccaaggtagataaacc |
5276049 |
T |
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| Q |
319 |
tcttgctatcctct |
332 |
Q |
| |
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|||||||||||||| |
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| T |
5276050 |
tcttgctatcctct |
5276063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 74 - 322
Target Start/End: Complemental strand, 5269857 - 5269609
Alignment:
| Q |
74 |
tagcttgcaatctgacgaaataaattgaacatgttcctccatcataattttgttaatcaaattcagcaaaacttgttccaattcttctccatcactccaa |
173 |
Q |
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||||||||| || || | ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5269857 |
tagcttgcagtcagatgcaatgaattgaacatgttcctccatcataattttgttaatcaaattcatcaaaacttgttccaattcttctccatcactccaa |
5269758 |
T |
|
| Q |
174 |
ccatgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccaaactggaaaatttttccttggcatcacaaagtctctttctctaagcctca |
273 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5269757 |
ccatgaatttcagccttaacaagtgaaggatctttgcatatcaaatcccacactggaaaattcttccttggcatcacaaagtctctttctctaagcctca |
5269658 |
T |
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| Q |
274 |
agctagggcaatagtccccagcaccatcaccaaggtagataaacctctt |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5269657 |
agctagggcaatagtccccagcaccatcaccaaggtagataaatctctt |
5269609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 23 - 329
Target Start/End: Original strand, 5271765 - 5272071
Alignment:
| Q |
23 |
aactgagacagctttaggcaaagatacaagtactggactagatagagtttgtagcttgcaatctgacgaaataaattgaacatgttcctccatcataatt |
122 |
Q |
| |
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||||| || |||||||||||| ||| |||| || || ||||||||||||| ||||||||||| | | ||| |||||||| | ||||| || |||||| |
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| T |
5271765 |
aactgggagagctttaggcaaggattcaagcacatgaatagatagagtttgcagcttgcaatcagtagcaatgaattgaacgttgtcctcaatgataatt |
5271864 |
T |
|
| Q |
123 |
ttgttaatcaaattcagcaaaacttgttccaattcttctccatcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaatccc |
222 |
Q |
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||||| ||||| | | ||||| |||||| | ||||||||||||| |||||||||||||||||| || ||||||||||| ||||||||||||||||||| |
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| T |
5271865 |
ttgttgatcaattgaatcaaaatttgttcaagctcttctccatcacaccaaccatgaatttcagccttaacaagtgaagggtctttgcatatcaaatccc |
5271964 |
T |
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| Q |
223 |
aaactggaaaatttttccttggcatcacaaagtctctttctctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaacctctt |
322 |
Q |
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| ||||||||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
5271965 |
acactggaaaattcttccttggcatcacaaagtctctctctttaaacctcaagctagggcaataatctccagcaccatcaccaaggtagataaacctctt |
5272064 |
T |
|
| Q |
323 |
gctatcc |
329 |
Q |
| |
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| ||||| |
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| T |
5272065 |
gttatcc |
5272071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 5252068 - 5251764
Alignment:
| Q |
19 |
gcctaactgagacagctttaggcaaagatacaagtactggactagatagagtttgtagcttgcaatctgacgaaataaattgaacatgttcctccatcat |
118 |
Q |
| |
|
|||||||||| | |||||||||||| | | || | || ||| | ||||||||||||||||||||||| ||||| |||||| ||| |||||| || || |
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| T |
5252068 |
gcctaactgaaagagctttaggcaaggtttcatgcacaggaattgatagagtttgtagcttgcaatcacttgaaatgaattgagcattttcctcaatgat |
5251969 |
T |
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| Q |
119 |
aattttgttaatcaaattcagcaaaacttgttccaattcttctccatcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaa |
218 |
Q |
| |
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||||||||| ||||| | | ||||| |||||| | ||||||||||||| |||||||||||||||||| || ||||||||||| ||||||||||||||| |
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| T |
5251968 |
aattttgttgatcaattgaatcaaaatttgttcaagctcttctccatcacaccaaccatgaatttcagccttaacaagtgaagggtctttgcatatcaaa |
5251869 |
T |
|
| Q |
219 |
tcccaaactggaaaatttttccttggcatcacaaagtctctttctctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaacc |
318 |
Q |
| |
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||||| ||||||||||| ||||||||||||| || ||| | ||||||||||| || ||||| ||||| || ||| |||||||||||||||||||||| |
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| T |
5251868 |
tcccacactggaaaattcttccttggcatcatgaaatctttctctctaagccttaaactaggacaataatctccaatgccatcaccaaggtagataaacc |
5251769 |
T |
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| Q |
319 |
tcttg |
323 |
Q |
| |
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||||| |
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| T |
5251768 |
tcttg |
5251764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 194 - 329
Target Start/End: Complemental strand, 14945163 - 14945028
Alignment:
| Q |
194 |
aagtgaaggatctttgcatatcaaatcccaaactggaaaatttttccttggcatcacaaagtctctttctctaagcctcaagctagggcaatagtcccca |
293 |
Q |
| |
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|||| |||| ||||| |||||||| ||||| |||||||| || ||||||| ||| |||||||||||||||||||| ||||| |||||||||||||| ||| |
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| T |
14945163 |
aagtaaagggtcttttcatatcaagtcccatactggaaagttcttccttgacataacaaagtctctttctctaagtctcaaactagggcaatagtctcca |
14945064 |
T |
|
| Q |
294 |
gcaccatcaccaaggtagataaacctcttgctatcc |
329 |
Q |
| |
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|||||||||| |||||||||| |||||| ||||| |
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| T |
14945063 |
ataccatcaccatggtagataaatctcttgttatcc |
14945028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 156 - 316
Target Start/End: Original strand, 26314296 - 26314456
Alignment:
| Q |
156 |
tcttctccatcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccaaactggaaaatttttccttggcatcacaaagt |
255 |
Q |
| |
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||||||||||||||||| ||| ||||| |||||| |||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||||| |
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| T |
26314296 |
tcttctccatcactccattcataaattttagctttaacaagtgaaggatctttgcatatcaagtcccatacaggaaaattcttccttggcatcacaaagt |
26314395 |
T |
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| Q |
256 |
ctctttctctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaa |
316 |
Q |
| |
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|| ||||| |||| || ||||| || ||||| || ||| |||||||||||| |||||||| |
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| T |
26314396 |
ctttttctttaaggcttaagcttggacaataatctccactaccatcaccaagatagataaa |
26314456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 156 - 319
Target Start/End: Original strand, 43109245 - 43109408
Alignment:
| Q |
156 |
tcttctccatcactccaaccatgaatttcagctttgacaagtgaaggatctttgcatatcaaatcccaaactggaaaatttttccttggcatcacaaagt |
255 |
Q |
| |
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||||| ||||||||||| ||| ||||| |||||| |||||||||||||||||||| || |||||||| || |||||||| ||||||||||||||||||| |
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| T |
43109245 |
tcttcaccatcactccattcataaattttagctttaacaagtgaaggatctttgcaaattaaatcccacacaggaaaattcttccttggcatcacaaagt |
43109344 |
T |
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| Q |
256 |
ctctttctctaagcctcaagctagggcaatagtccccagcaccatcaccaaggtagataaacct |
319 |
Q |
| |
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|| ||||| ||||||||||||| || ||||| || ||| |||||| ||||| ||||||||||| |
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| T |
43109345 |
ctttttctttaagcctcaagcttggacaataatctccactaccatccccaagatagataaacct |
43109408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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