View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18262_low_7 (Length: 232)

Name: NF18262_low_7
Description: NF18262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18262_low_7
NF18262_low_7
[»] chr5 (8 HSPs)
chr5 (1-204)||(38988259-38988462)
chr5 (92-215)||(40412189-40412312)
chr5 (1-78)||(40418837-40418914)
chr5 (1-78)||(39880382-39880459)
chr5 (1-78)||(1163196-1163264)
chr5 (93-153)||(39400612-39400672)
chr5 (86-138)||(40419086-40419138)
chr5 (156-201)||(1162894-1162939)
[»] chr4 (3 HSPs)
chr4 (1-78)||(25911731-25911808)
chr4 (10-74)||(44444232-44444296)
chr4 (86-136)||(25911486-25911536)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 38988259 - 38988462
Alignment:
Q  1 ttctgtttgatatttatgtttattccgattacaagaacaagttatgtgtgttgatcttgcttcccaaaccatgcctgtggatctgttatatggattcatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38988259 ttctgtttgatatttatgtttattccgattacaagaacaagttatgtgtgttgatcttgcttcccaaaccatgcctgtggatctgttatatggattcatt 38988358  T
Q  101 cctgtgctgggtttaaatattttgtggatctgttatattgtttgttataaatatgtaaataaatagttcactctatttgttcttgagttctgattaatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38988359 cctgtgctgggtttaaatattttgtggatctgttatattgtttgttataaatatgtaaataaatagttcactctatttgttcttgagttctgattaatct 38988458  T
Q  201 acta 204  Q
    ||||    
T  38988459 acta 38988462  T

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Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 40412189 - 40412312
Alignment:
Q  92 ggattcattcctgtgctgggtttaaatattttgtggatctgttatattgtttgttataaatatgtaaataaatagttcactctatttgttcttgagttct 191  Q
    ||||||||||||||||||| || ||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  40412189 ggattcattcctgtgctggattgaaatattttgtggatctgttacattgttttttataaatatataaataaatagttcactctatttgttcttgagttct 40412288  T
Q  192 gattaatctactatatatcgtaag 215  Q
    |||||||||||||  |||||||||    
T  40412289 gattaatctactaagtatcgtaag 40412312  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 40418837 - 40418914
Alignment:
Q  1 ttctgtttgatatttatgtttattccgattacaagaacaagttatgtgtgttgatcttgcttcccaaaccatgcctgt 78  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||    
T  40418837 ttctgtttgatatttatgtttattccgattacaagaacaagttacgtgtgttgatcgtgcttcacaaaccatgcctgt 40418914  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 39880382 - 39880459
Alignment:
Q  1 ttctgtttgatatttatgtttattccgattacaagaacaagttatgtgtgttgatcttgcttcccaaaccatgcctgt 78  Q
    ||||||||||||||||||||||||||||| ||||||| | |||  ||||||||||||||||||||||| |||| ||||    
T  39880382 ttctgtttgatatttatgtttattccgatcacaagaatatgttccgtgtgttgatcttgcttcccaaaacatgtctgt 39880459  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 1163264 - 1163196
Alignment:
Q  1 ttctgtttgatatttatgtttattccgattacaagaacaagttatgtgtgttgatcttgcttcccaaaccatgcctgt 78  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||| |||||||||||||||||||||    
T  1163264 ttctgtttgatatttatgtttatt---------agaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgt 1163196  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 39400612 - 39400672
Alignment:
Q  93 gattcattcctgtgctgggtttaaatattttgtggatctgttatattgtttgttataaata 153  Q
    ||||||||||| | || | || | |||||| ||||||||||||||||||||||||||||||    
T  39400612 gattcattcctattcttgattgacatatttggtggatctgttatattgtttgttataaata 39400672  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 40419086 - 40419138
Alignment:
Q  86 ttatatggattcattcctgtgctgggtttaaatattttgtggatctgttatat 138  Q
    |||||| |||| ||||||||||||  || ||||||||||||||||||||||||    
T  40419086 ttatattgattaattcctgtgctgaattgaaatattttgtggatctgttatat 40419138  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 1162939 - 1162894
Alignment:
Q  156 taaataaatagttcactctatttgttcttgagttctgattaatcta 201  Q
    |||| ||||||||||||| |||||| |||||||| |||||||||||    
T  1162939 taaacaaatagttcactccatttgtacttgagttttgattaatcta 1162894  T

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Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 25911808 - 25911731
Alignment:
Q  1 ttctgtttgatatttatgtttattccgattacaagaacaagttatgtgtgttgatcttgcttcccaaaccatgcctgt 78  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||    
T  25911808 ttctgtttgatacttatgtttattccgattacaagaacaagttacgtgtgttgatcatgcttcccaaaccatgtctgt 25911731  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 44444296 - 44444232
Alignment:
Q  10 atatttatgtttattccgattacaagaacaagttatgtgtgttgatcttgcttcccaaaccatgc 74  Q
    |||||||||||||||| || ||||||||||||||| |||||||  || |||||||||||||||||    
T  44444296 atatttatgtttattctgactacaagaacaagttacgtgtgttactcgtgcttcccaaaccatgc 44444232  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 25911536 - 25911486
Alignment:
Q  86 ttatatggattcattcctgtgctgggtttaaatattttgtggatctgttat 136  Q
    ||||||||||||||||||||||||| || |||||||||| |||||||||||    
T  25911536 ttatatggattcattcctgtgctggattgaaatattttggggatctgttat 25911486  T

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