View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18263_high_13 (Length: 320)
Name: NF18263_high_13
Description: NF18263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18263_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 30955428 - 30955720
Alignment:
| Q |
18 |
atagttatggaatgatgcttttagagatggtcggagtgagaaacaatattgatgttaacacaaatcaaactagcgagtattttccagattggatatacaa |
117 |
Q |
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| T |
30955428 |
atagttatggaatgatgcttttagagatggttggagtgagaaacaatattgatgttaatacaaatcaaactagcgagtattttccagattggatatacaa |
30955527 |
T |
|
| Q |
118 |
taagctagaaaaggagagtgatttgagacctgacatagtgatggccattgaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30955528 |
taagctagaaaaggagagtgatttgagacctgacatagtgatggccattgaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcatt |
30955627 |
T |
|
| Q |
218 |
caaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatgaatgtccttgaaataccaccaaaacctttg |
310 |
Q |
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| T |
30955628 |
caaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatgaatgtccttgaaataccaccaaaacctttg |
30955720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 30945168 - 30945460
Alignment:
| Q |
18 |
atagttatggaatgatgcttttagagatggtcggagtgagaaacaatattgatgttaacacaaatcaaactagcgagtattttccagattggatatacaa |
117 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30945168 |
atagttatggaatgatgcttttagagatggtgggagtgagaaacaatattgatgttaaaacaaatcaaactagcgagtattttccagattggatatacaa |
30945267 |
T |
|
| Q |
118 |
taagctagaaaaggagagtgatttgagacctgacatagtgatggccattgaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcatt |
217 |
Q |
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||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30945268 |
taagctagaaacggatagtgatttgagatctgacatagtgatggccattgaagaaaatgagattgcaaaaggaatgactattgttggtttatggtgcatt |
30945367 |
T |
|
| Q |
218 |
caaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatgaatgtccttgaaataccaccaaaacctttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30945368 |
caaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatgaatatccttgaaataccaccaaaacctttg |
30945460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 167 - 307
Target Start/End: Original strand, 31230110 - 31230250
Alignment:
| Q |
167 |
gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt |
266 |
Q |
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|||||| |||| ||||||| || |||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
31230110 |
gaagaagatgaaattgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgt |
31230209 |
T |
|
| Q |
267 |
tggaaggtagcatgaatgtccttgaaataccaccaaaacct |
307 |
Q |
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| ||||| | || |||| | |||||||||||||||||| |
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| T |
31230210 |
tagaaggcaacaagaattgtttggaaataccaccaaaacct |
31230250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 31189319 - 31189180
Alignment:
| Q |
167 |
gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt |
266 |
Q |
| |
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|||||| | |||||||||| ||||||| ||||| ||||||||||||||||||||||| |||| |||| |||| |||||||||| |||||||||||||| |
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| T |
31189319 |
gaagaagacgagattgcaaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgt |
31189220 |
T |
|
| Q |
267 |
tggaaggtagcatgaatgtccttgaaataccaccaaaacc |
306 |
Q |
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| |||| || ||||||| | |||||||||||||| ||||| |
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| T |
31189219 |
tagaagttaacatgaatttacttgaaataccacctaaacc |
31189180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 167 - 313
Target Start/End: Complemental strand, 31145261 - 31145115
Alignment:
| Q |
167 |
gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt |
266 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||| |||| |||| |||||||||| ||| |||||||||| |
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| T |
31145261 |
gaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagttattgaaatgt |
31145162 |
T |
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| Q |
267 |
tggaaggtagcatgaatgtccttgaaataccaccaaaacctttgctt |
313 |
Q |
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| |||| || ||||||| |||||||||||||| ||||| |||||| |
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| T |
31145161 |
tagaagttaacatgaattcacttgaaataccacccaaaccgttgctt |
31145115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 189 - 306
Target Start/End: Complemental strand, 31201104 - 31200987
Alignment:
| Q |
189 |
gaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatgaatgtcct |
288 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| |||| |||| |||| |||||||||| ||||||||||||||| |||| || ||||||| | || |
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| T |
31201104 |
gaatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttact |
31201005 |
T |
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| Q |
289 |
tgaaataccaccaaaacc |
306 |
Q |
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|||||||||||| ||||| |
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| T |
31201004 |
tgaaataccacctaaacc |
31200987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 31171574 - 31171435
Alignment:
| Q |
167 |
gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt |
266 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||| |||| |||| |||||||||| |||||||||||||| |
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| T |
31171574 |
gaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgt |
31171475 |
T |
|
| Q |
267 |
tggaaggtagcatgaatgtccttgaaataccaccaaaacc |
306 |
Q |
| |
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| |||| || |||||| || ||||| ||||||||||| |
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| T |
31171474 |
tagaagttacaatgaattcactggaaatgccaccaaaacc |
31171435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 167 - 313
Target Start/End: Original strand, 30961325 - 30961471
Alignment:
| Q |
167 |
gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt |
266 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| ||||| ||||||||||| || |||| | || |||||||||| ||| ||||||||| |
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| T |
30961325 |
gaagaaaatgagattgcaaagagaatgaccattgtgggtttgtggtgtattcaaacatttcctaatggcaggcctacaatgagtaaagtagttgaaatgt |
30961424 |
T |
|
| Q |
267 |
tggaaggtagcatgaatgtcctt-gaaataccaccaaaacctttgctt |
313 |
Q |
| |
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| |||| || ||||||| || || ||||||||||||||||| |||||| |
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| T |
30961425 |
tagaagttaacatgaat-tcattggaaataccaccaaaaccattgctt |
30961471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 313
Target Start/End: Original strand, 31224830 - 31224976
Alignment:
| Q |
167 |
gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt |
266 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||| ||||| ||||| |||||||| || || |||||| | || |||||||||| |||||||||||||| |
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| T |
31224830 |
gaagaagataagattgcaaggagaatgaccattgtaggtttgtggtgtattcaaacgtttcctaatgataggcctacaatgagtaaagtgattgaaatgt |
31224929 |
T |
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| Q |
267 |
tggaaggtagcatgaatgtcctt-gaaataccaccaaaacctttgctt |
313 |
Q |
| |
|
| || | |||||||||| || || ||||| ||||||||||| |||||| |
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| T |
31224930 |
tagatgttagcatgaat-tcgttggaaatgccaccaaaaccattgctt |
31224976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 31214580 - 31214664
Alignment:
| Q |
189 |
gaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaagg |
273 |
Q |
| |
|
|||||||||| || || |||||||||||||||||| | ||||||||| |||| ||||||||||||| ||||||||||| ||||| |
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| T |
31214580 |
gaatgaccatagtaggattatggtgcattcaaacacttccaaatgatagacctgcaatgagtagagttattgaaatgttagaagg |
31214664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 313
Target Start/End: Original strand, 30992807 - 30992953
Alignment:
| Q |
167 |
gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt |
266 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||||| |||| ||||| ||||||||||| || |||| |||| |||||||||| ||| ||||||||| |
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| T |
30992807 |
gaagaagatgagattgcaaagaggatgaccattgtgagtttgtggtgtattcaaacatttcctaatggcagacctacaatgagtaaagtagttgaaatgt |
30992906 |
T |
|
| Q |
267 |
tggaaggtagcatgaatgtcctt-gaaataccaccaaaacctttgctt |
313 |
Q |
| |
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| |||| | ||| ||| || || ||||||||||||||||| |||||| |
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| T |
30992907 |
tagaagttgacattaat-tcgttggaaataccaccaaaaccattgctt |
30992953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 280
Target Start/End: Original strand, 44036038 - 44036118
Alignment:
| Q |
200 |
gttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatg |
280 |
Q |
| |
|
|||||||| ||||||||||||||| | || | | || |||| ||||| |||| ||||||||| |||||||| ||||||||| |
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|
| T |
44036038 |
gttggtttgtggtgcattcaaacaattcctactcatagacctacaataagtaaagtgattgatatgttggatggtagcatg |
44036118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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